1 #ifndef CHIMERAREALIGNER_H
2 #define CHIMERAREALIGNER_H
8 * Created by westcott on 2/12/10.
9 * Copyright 2010 Schloss Lab. All rights reserved.
14 #include "alignment.hpp"
16 /***********************************************************/
18 class ChimeraReAligner {
21 ChimeraReAligner(vector<Sequence*>, int, int);
24 void reAlign(Sequence*, vector<results>);
29 vector<Sequence*> templateSeqs;
32 Sequence* getSequence(string); //find sequence from name
35 /***********************************************************/