1 #ifndef CHIMERABELLEROPHONCOMMAND_H
2 #define CHIMERABELLEROPHONCOMMAND_H
5 * chimerabellerophoncommand.h
8 * Created by westcott on 4/1/10.
9 * Copyright 2010 Schloss Lab. All rights reserved.
14 #include "command.hpp"
18 /***********************************************************/
20 class ChimeraBellerophonCommand : public Command {
22 ChimeraBellerophonCommand(string);
23 ChimeraBellerophonCommand();
24 ~ChimeraBellerophonCommand(){}
26 vector<string> setParameters();
27 string getCommandName() { return "chimera.bellerophon"; }
28 string getCommandCategory() { return "Sequence Processing"; }
29 string getHelpString();
32 void help() { m->mothurOut(getHelpString()); }
37 bool abort, filter, correction;
38 string fastafile, outputDir;
39 int processors, window, increment, numSeqs;
41 vector<string> outputNames;
42 vector<string> fastaFileNames;
45 /***********************************************************/