1 #ifndef CATCHALLCOMMAND_H
2 #define CATCHALLCOMMAND_H
8 * Created by westcott on 5/11/10.
9 * Copyright 2010 Schloss Lab. All rights reserved.
13 #include "command.hpp"
14 #include "inputdata.h"
16 #include "sabundvector.hpp"
22 /****************************************************************************/
24 class CatchAllCommand : public Command {
28 CatchAllCommand(string);
31 vector<string> getRequiredParameters();
32 vector<string> getValidParameters();
33 vector<string> getRequiredFiles();
34 map< string, vector<string> > getOutputFiles() { return outputTypes; }
40 GlobalData* globaldata;
44 string outputDir, sabundfile, rabundfile, listfile, format;
47 vector<string> outputNames;
48 map< string, vector<string> > outputTypes;
50 string process(SAbundVector*);
53 /****************************************************************************/