bp_usage/translate_seq

   1 Author:         Martin Asser Hansen - Copyright (C) - All rights reserved
   2
   3 Contact:        mail@maasha.dk
   4
   5 Date:           August 2007
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   7 License:        GNU General Public License version 2 (http://www.gnu.org/copyleft/gpl.html)
   8
   9 Description:    Translate DNA sequence into protein sequence.
  10
  11 Usage:          ... | $script [options]
  12
  13 Options:   [-f <string> | --frames=<string>]    -  Comma separated list of frames of translation: 1,2,3,-1,-2,-3  -  Default=all
  14 Options:   [-I <file>   | --stream_in=<file>]   -  Read input from stream file  -  Default=STDIN
  15 Options:   [-O <file>   | --stream_out=<file>]  -  Write output to stream file  -  Default=STDOUT
  16
  17 Examples:   ... | $script -f 1           -  Translate into first forward reading frame.
  18 Examples:   ... | $script -f "-1,-2,-3"  -  Translate into all reverse reading frames.
  19
  20 Keys in: SEQ  -  Sequence.
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  22 Keys out: FRAME  -  Frame of translation.