1 Author: Martin Asser Hansen - Copyright (C) - All rights reserved
3 Contact: mail@maasha.dk
7 License: GNU General Public License version 2 (http://www.gnu.org/copyleft/gpl.html)
9 Description: Plot hits on a karyogram for a given genome.
11 Usage: ... | plot_karyogram [options]
13 Options: [-x | --no_stream] - Do not emit records.
14 Options: [-o <file> | --data_out=<file>] - Write result to file.
15 Options: [-g <genome> | --genome=<genome>] - Genome layout of karyogram - Default=hg18
16 Options: [-f <string> | --feat_color=<string>] - Color of features - Default=black
17 Options: [-I <file> | --stream_in=<file>] - Read input from stream file - Default=STDIN
18 Options: [-O <file> | --stream_out=<file>] - Write output to stream file - Default=STDOUT
20 Examples: ... | plot_karyogram -x -g mm8 -o plot.svg - Create plot and save to 'plot.svg'.