8 * Created by Sarah Westcott on 7/9/09.
9 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
15 #include "filterseqscommand.h"
16 #include "sequence.hpp"
21 vector<string> leftParent; //keep the name of closest left associated with the two scores
22 vector<string> rightParent; //keep the name of closest right associated with the two scores
23 vector<float> score; //so you can keep last score and calc this score and keep whichever is bigger.
24 vector<float> closestLeft; //keep the closest left associated with the two scores
25 vector<float> closestRight; //keep the closest right associated with the two scores
31 /***********************************************************/
33 class Bellerophon : public Chimera {
42 void setCons(string){};
43 void setQuantiles(string) {};
48 FilterSeqsCommand* filterSeqs;
49 vector<Sequence> seqs;
50 vector<Preference> pref;
55 void generatePreferences(vector<SeqMap>, vector<SeqMap>, int);
56 int createSparseMatrix(int, int, SparseMatrix*, vector<Sequence>);
63 /***********************************************************/