8 * Created by westcott on 11/4/09.
9 * Copyright 2009 Schloss Lab. All rights reserved.
14 #include "sequence.hpp"
15 #include "database.hpp"
17 /**************************************************************************************************/
23 AlignmentDB(string, string, int, float, float, float, float, int); //reads fastafile passed in and stores sequences
25 AlignmentDB(const AlignmentDB& adb);
28 Sequence findClosestSequence(Sequence*);
29 float getSearchScore() { return search->getSearchScore(); }
30 int getLongestBase() { return longest; }
33 int numSeqs, longest, threadID;
37 vector<Sequence> templateSequences;
38 Sequence emptySequence;
42 /**************************************************************************************************/