8 * Created by westcott on 11/4/09.
9 * Copyright 2009 Schloss Lab. All rights reserved.
14 #include "sequence.hpp"
15 #include "database.hpp"
17 /**************************************************************************************************/
23 AlignmentDB(string, string, int, float, float, float, float, int); //reads fastafile passed in and stores sequences
27 Sequence findClosestSequence(Sequence*);
28 float getSearchScore() { return search->getSearchScore(); }
29 int getLongestBase() { return longest; }
32 int numSeqs, longest, threadID;
36 vector<Sequence> templateSequences;
37 Sequence emptySequence;
41 /**************************************************************************************************/