9 /* Begin PBXBuildFile section */
10 372E12700F26365B0095CF7E /* readotucommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 372E126F0F26365B0095CF7E /* readotucommand.cpp */; };
11 372E12960F263D5A0095CF7E /* readdistcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 372E12950F263D5A0095CF7E /* readdistcommand.cpp */; };
12 372E12ED0F264D320095CF7E /* commandfactory.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 372E12EC0F264D320095CF7E /* commandfactory.cpp */; };
13 374610780F40645300460C57 /* unifracweightedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 374610770F40645300460C57 /* unifracweightedcommand.cpp */; };
14 3746107E0F4064D100460C57 /* weighted.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3746107D0F4064D100460C57 /* weighted.cpp */; };
15 374610830F40652400460C57 /* unweighted.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 374610820F40652400460C57 /* unweighted.cpp */; };
16 3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */; };
17 379293C30F2DE73400B9034A /* treemap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 379293C20F2DE73400B9034A /* treemap.cpp */; };
18 379294700F2E191800B9034A /* parsimonycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3792946F0F2E191800B9034A /* parsimonycommand.cpp */; };
19 3792948A0F2E258500B9034A /* parsimony.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 379294890F2E258500B9034A /* parsimony.cpp */; };
20 37AD4CE40F28AEA300AA2D49 /* sharedlistvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */; };
21 37AD4DBB0F28E2FE00AA2D49 /* tree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */; };
22 37AD4DCA0F28F3DD00AA2D49 /* readtree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */; };
23 37AFC71F0F445386005F492D /* sharedsobscollectsummary.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */; };
24 37B28F680F27590100808A62 /* deconvolutecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37B28F670F27590100808A62 /* deconvolutecommand.cpp */; };
25 37D928550F21331F001D4494 /* ace.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927B80F21331F001D4494 /* ace.cpp */; };
26 37D928560F21331F001D4494 /* averagelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927BA0F21331F001D4494 /* averagelinkage.cpp */; };
27 37D928570F21331F001D4494 /* bootstrap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927BB0F21331F001D4494 /* bootstrap.cpp */; };
28 37D928580F21331F001D4494 /* calculator.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927BD0F21331F001D4494 /* calculator.cpp */; };
29 37D928590F21331F001D4494 /* chao1.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927BF0F21331F001D4494 /* chao1.cpp */; };
30 37D9285A0F21331F001D4494 /* cluster.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927C10F21331F001D4494 /* cluster.cpp */; };
31 37D9285B0F21331F001D4494 /* clustercommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927C30F21331F001D4494 /* clustercommand.cpp */; };
32 37D9285C0F21331F001D4494 /* collect.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927C50F21331F001D4494 /* collect.cpp */; };
33 37D9285D0F21331F001D4494 /* collectcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927C70F21331F001D4494 /* collectcommand.cpp */; };
34 37D9285E0F21331F001D4494 /* collectsharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */; };
35 37D928600F21331F001D4494 /* commandoptionparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927D00F21331F001D4494 /* commandoptionparser.cpp */; };
36 37D928610F21331F001D4494 /* completelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927D20F21331F001D4494 /* completelinkage.cpp */; };
37 37D928620F21331F001D4494 /* database.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927D30F21331F001D4494 /* database.cpp */; };
38 37D928630F21331F001D4494 /* engine.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927D70F21331F001D4494 /* engine.cpp */; };
39 37D928640F21331F001D4494 /* errorchecking.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927D90F21331F001D4494 /* errorchecking.cpp */; };
40 37D928650F21331F001D4494 /* fastamap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927DB0F21331F001D4494 /* fastamap.cpp */; };
41 37D928660F21331F001D4494 /* fileoutput.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927DD0F21331F001D4494 /* fileoutput.cpp */; };
42 37D928670F21331F001D4494 /* globaldata.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927DF0F21331F001D4494 /* globaldata.cpp */; };
43 37D928680F21331F001D4494 /* groupmap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927E10F21331F001D4494 /* groupmap.cpp */; };
44 37D928690F21331F001D4494 /* helpcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927E30F21331F001D4494 /* helpcommand.cpp */; };
45 37D9286A0F21331F001D4494 /* inputdata.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927E50F21331F001D4494 /* inputdata.cpp */; };
46 37D9286B0F21331F001D4494 /* jackknife.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927E70F21331F001D4494 /* jackknife.cpp */; };
47 37D9286C0F21331F001D4494 /* kmer.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927E90F21331F001D4494 /* kmer.cpp */; };
48 37D9286D0F21331F001D4494 /* kmerdb.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927EB0F21331F001D4494 /* kmerdb.cpp */; };
49 37D9286E0F21331F001D4494 /* listvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927ED0F21331F001D4494 /* listvector.cpp */; };
50 37D9286F0F21331F001D4494 /* mothur.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927EF0F21331F001D4494 /* mothur.cpp */; };
51 37D928700F21331F001D4494 /* nameassignment.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F00F21331F001D4494 /* nameassignment.cpp */; };
52 37D928710F21331F001D4494 /* nocommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F20F21331F001D4494 /* nocommand.cpp */; };
53 37D928720F21331F001D4494 /* npshannon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F40F21331F001D4494 /* npshannon.cpp */; };
54 37D928730F21331F001D4494 /* ordervector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F70F21331F001D4494 /* ordervector.cpp */; };
55 37D928740F21331F001D4494 /* parselistcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927F90F21331F001D4494 /* parselistcommand.cpp */; };
56 37D928750F21331F001D4494 /* progress.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927FB0F21331F001D4494 /* progress.cpp */; };
57 37D928760F21331F001D4494 /* quitcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927FD0F21331F001D4494 /* quitcommand.cpp */; };
58 37D928770F21331F001D4494 /* rabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D927FF0F21331F001D4494 /* rabundvector.cpp */; };
59 37D928780F21331F001D4494 /* rarecalc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928010F21331F001D4494 /* rarecalc.cpp */; };
60 37D928790F21331F001D4494 /* raredisplay.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928030F21331F001D4494 /* raredisplay.cpp */; };
61 37D9287A0F21331F001D4494 /* rarefact.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928050F21331F001D4494 /* rarefact.cpp */; };
62 37D9287B0F21331F001D4494 /* rarefactcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928070F21331F001D4494 /* rarefactcommand.cpp */; };
63 37D9287C0F21331F001D4494 /* rarefactsharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */; };
64 37D928800F21331F001D4494 /* readmatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928120F21331F001D4494 /* readmatrix.cpp */; };
65 37D928840F21331F001D4494 /* sabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9281A0F21331F001D4494 /* sabundvector.cpp */; };
66 37D928850F21331F001D4494 /* sequence.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9281C0F21331F001D4494 /* sequence.cpp */; };
67 37D928860F21331F001D4494 /* shannon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9281E0F21331F001D4494 /* shannon.cpp */; };
68 37D928870F21331F001D4494 /* shared.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928200F21331F001D4494 /* shared.cpp */; };
69 37D928880F21331F001D4494 /* sharedace.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928220F21331F001D4494 /* sharedace.cpp */; };
70 37D928890F21331F001D4494 /* sharedchao1.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928240F21331F001D4494 /* sharedchao1.cpp */; };
71 37D9288A0F21331F001D4494 /* sharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928260F21331F001D4494 /* sharedcommand.cpp */; };
72 37D9288B0F21331F001D4494 /* sharedjabund.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928280F21331F001D4494 /* sharedjabund.cpp */; };
73 37D9288C0F21331F001D4494 /* sharedjclass.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9282A0F21331F001D4494 /* sharedjclass.cpp */; };
74 37D9288D0F21331F001D4494 /* sharedjest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9282C0F21331F001D4494 /* sharedjest.cpp */; };
75 37D9288E0F21331F001D4494 /* sharedordervector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9282E0F21331F001D4494 /* sharedordervector.cpp */; };
76 37D9288F0F21331F001D4494 /* sharedrabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928300F21331F001D4494 /* sharedrabundvector.cpp */; };
77 37D928900F21331F001D4494 /* sharedsabundvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928320F21331F001D4494 /* sharedsabundvector.cpp */; };
78 37D928910F21331F001D4494 /* sharedsobs.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928340F21331F001D4494 /* sharedsobs.cpp */; };
79 37D928920F21331F001D4494 /* sharedsorabund.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928360F21331F001D4494 /* sharedsorabund.cpp */; };
80 37D928930F21331F001D4494 /* sharedsorclass.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928380F21331F001D4494 /* sharedsorclass.cpp */; };
81 37D928940F21331F001D4494 /* sharedsorest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9283A0F21331F001D4494 /* sharedsorest.cpp */; };
82 37D928950F21331F001D4494 /* sharedthetan.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9283C0F21331F001D4494 /* sharedthetan.cpp */; };
83 37D928960F21331F001D4494 /* sharedthetayc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */; };
84 37D928970F21331F001D4494 /* simpson.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928400F21331F001D4494 /* simpson.cpp */; };
85 37D928980F21331F001D4494 /* singlelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928420F21331F001D4494 /* singlelinkage.cpp */; };
86 37D928990F21331F001D4494 /* sparsematrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928440F21331F001D4494 /* sparsematrix.cpp */; };
87 37D9289A0F21331F001D4494 /* summarycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928460F21331F001D4494 /* summarycommand.cpp */; };
88 37D9289B0F21331F001D4494 /* summarysharedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */; };
89 37D9289C0F21331F001D4494 /* uvest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9284D0F21331F001D4494 /* uvest.cpp */; };
90 37D9289D0F21331F001D4494 /* validcalculator.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D9284F0F21331F001D4494 /* validcalculator.cpp */; };
91 37D9289E0F21331F001D4494 /* validcommands.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928510F21331F001D4494 /* validcommands.cpp */; };
92 37D9289F0F21331F001D4494 /* validparameter.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37D928530F21331F001D4494 /* validparameter.cpp */; };
93 37E5F3E30F29FD4200F8D827 /* treenode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37E5F3E20F29FD4200F8D827 /* treenode.cpp */; };
94 37E5F4920F2A3DA800F8D827 /* readtreecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */; };
95 8DD76F6A0486A84900D96B5E /* Mothur.1 in CopyFiles */ = {isa = PBXBuildFile; fileRef = C6859E8B029090EE04C91782 /* Mothur.1 */; };
96 A70B53AA0F4CD7AD0064797E /* getgroupcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */; };
97 A70B53AB0F4CD7AD0064797E /* getlabelcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */; };
98 A70B53AC0F4CD7AD0064797E /* getlinecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */; };
99 EB1216880F619B83004A865F /* bergerparker.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB1216870F619B83004A865F /* bergerparker.cpp */; };
100 EB1216E50F61ACFB004A865F /* bstick.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB1216E40F61ACFB004A865F /* bstick.cpp */; };
101 EB1217230F61C9AC004A865F /* sharedkstest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB1217220F61C9AC004A865F /* sharedkstest.cpp */; };
102 EB6E68190F5F1C780044E17B /* qstat.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB6E68180F5F1C780044E17B /* qstat.cpp */; };
103 EB6F015B0F6AC1670048081A /* sharedbdiversity.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */; };
104 EB9303EB0F534D9400E8EF26 /* logsd.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB9303EA0F534D9400E8EF26 /* logsd.cpp */; };
105 EB9303F90F53517300E8EF26 /* geom.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB9303F80F53517300E8EF26 /* geom.cpp */; };
106 EBE2A41E0F7D5C6100A54BF8 /* jackknife2.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EBE2A41D0F7D5C6100A54BF8 /* jackknife2.cpp */; };
107 /* End PBXBuildFile section */
109 /* Begin PBXCopyFilesBuildPhase section */
110 8DD76F690486A84900D96B5E /* CopyFiles */ = {
111 isa = PBXCopyFilesBuildPhase;
113 dstPath = /usr/share/man/man1/;
114 dstSubfolderSpec = 0;
116 8DD76F6A0486A84900D96B5E /* Mothur.1 in CopyFiles */,
118 runOnlyForDeploymentPostprocessing = 1;
120 /* End PBXCopyFilesBuildPhase section */
122 /* Begin PBXFileReference section */
123 372E126E0F26365B0095CF7E /* readotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readotucommand.h; sourceTree = "<group>"; };
124 372E126F0F26365B0095CF7E /* readotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readotucommand.cpp; sourceTree = "<group>"; };
125 372E12940F263D5A0095CF7E /* readdistcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readdistcommand.h; sourceTree = "<group>"; };
126 372E12950F263D5A0095CF7E /* readdistcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readdistcommand.cpp; sourceTree = "<group>"; };
127 372E12EC0F264D320095CF7E /* commandfactory.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = commandfactory.cpp; sourceTree = "<group>"; };
128 374610760F40645300460C57 /* unifracweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unifracweightedcommand.h; sourceTree = "<group>"; };
129 374610770F40645300460C57 /* unifracweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unifracweightedcommand.cpp; sourceTree = "<group>"; };
130 3746107C0F4064D100460C57 /* weighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = weighted.h; sourceTree = "<group>"; };
131 3746107D0F4064D100460C57 /* weighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = weighted.cpp; sourceTree = "<group>"; };
132 374610810F40652400460C57 /* unweighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unweighted.h; sourceTree = "<group>"; };
133 374610820F40652400460C57 /* unweighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unweighted.cpp; sourceTree = "<group>"; };
134 3746109B0F40657600460C57 /* unifracunweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unifracunweightedcommand.h; sourceTree = "<group>"; };
135 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unifracunweightedcommand.cpp; sourceTree = "<group>"; };
136 379293C10F2DE73400B9034A /* treemap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treemap.h; sourceTree = "<group>"; };
137 379293C20F2DE73400B9034A /* treemap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treemap.cpp; sourceTree = "<group>"; };
138 3792946E0F2E191800B9034A /* parsimonycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsimonycommand.h; sourceTree = "<group>"; };
139 3792946F0F2E191800B9034A /* parsimonycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parsimonycommand.cpp; sourceTree = "<group>"; };
140 379294880F2E258500B9034A /* parsimony.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsimony.h; sourceTree = "<group>"; };
141 379294890F2E258500B9034A /* parsimony.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parsimony.cpp; sourceTree = "<group>"; };
142 3792948D0F2E271100B9034A /* treecalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treecalculator.h; sourceTree = "<group>"; };
143 37AD4CE20F28AEA300AA2D49 /* sharedlistvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedlistvector.h; sourceTree = "<group>"; };
144 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedlistvector.cpp; sourceTree = "<group>"; };
145 37AD4DB90F28E2FE00AA2D49 /* tree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = tree.h; sourceTree = "<group>"; };
146 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = tree.cpp; sourceTree = "<group>"; };
147 37AD4DC80F28F3DD00AA2D49 /* readtree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readtree.h; sourceTree = "<group>"; };
148 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readtree.cpp; sourceTree = "<group>"; };
149 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsobscollectsummary.h; sourceTree = "<group>"; };
150 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsobscollectsummary.cpp; sourceTree = "<group>"; };
151 37B28F660F27590100808A62 /* deconvolutecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = deconvolutecommand.h; sourceTree = "<group>"; };
152 37B28F670F27590100808A62 /* deconvolutecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = deconvolutecommand.cpp; sourceTree = "<group>"; };
153 37D927B80F21331F001D4494 /* ace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ace.cpp; sourceTree = "<group>"; };
154 37D927B90F21331F001D4494 /* ace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = ace.h; sourceTree = "<group>"; };
155 37D927BA0F21331F001D4494 /* averagelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = averagelinkage.cpp; sourceTree = "<group>"; };
156 37D927BB0F21331F001D4494 /* bootstrap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bootstrap.cpp; sourceTree = "<group>"; };
157 37D927BC0F21331F001D4494 /* bootstrap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bootstrap.h; sourceTree = "<group>"; };
158 37D927BD0F21331F001D4494 /* calculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = calculator.cpp; sourceTree = "<group>"; };
159 37D927BE0F21331F001D4494 /* calculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = calculator.h; sourceTree = "<group>"; };
160 37D927BF0F21331F001D4494 /* chao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chao1.cpp; sourceTree = "<group>"; };
161 37D927C00F21331F001D4494 /* chao1.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chao1.h; sourceTree = "<group>"; };
162 37D927C10F21331F001D4494 /* cluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = cluster.cpp; sourceTree = "<group>"; };
163 37D927C20F21331F001D4494 /* cluster.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = cluster.hpp; sourceTree = "<group>"; };
164 37D927C30F21331F001D4494 /* clustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clustercommand.cpp; sourceTree = "<group>"; };
165 37D927C40F21331F001D4494 /* clustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clustercommand.h; sourceTree = "<group>"; };
166 37D927C50F21331F001D4494 /* collect.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collect.cpp; sourceTree = "<group>"; };
167 37D927C60F21331F001D4494 /* collect.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collect.h; sourceTree = "<group>"; };
168 37D927C70F21331F001D4494 /* collectcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collectcommand.cpp; sourceTree = "<group>"; };
169 37D927C80F21331F001D4494 /* collectcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectcommand.h; sourceTree = "<group>"; };
170 37D927C90F21331F001D4494 /* collectdisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectdisplay.h; sourceTree = "<group>"; };
171 37D927CA0F21331F001D4494 /* collectorscurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectorscurvedata.h; sourceTree = "<group>"; };
172 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collectsharedcommand.cpp; sourceTree = "<group>"; };
173 37D927CC0F21331F001D4494 /* collectsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectsharedcommand.h; sourceTree = "<group>"; };
174 37D927CD0F21331F001D4494 /* command.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = command.hpp; sourceTree = "<group>"; };
175 37D927CF0F21331F001D4494 /* commandfactory.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandfactory.hpp; sourceTree = "<group>"; };
176 37D927D00F21331F001D4494 /* commandoptionparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = commandoptionparser.cpp; sourceTree = "<group>"; };
177 37D927D10F21331F001D4494 /* commandoptionparser.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandoptionparser.hpp; sourceTree = "<group>"; };
178 37D927D20F21331F001D4494 /* completelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = completelinkage.cpp; sourceTree = "<group>"; };
179 37D927D30F21331F001D4494 /* database.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = database.cpp; sourceTree = "<group>"; };
180 37D927D40F21331F001D4494 /* database.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = database.hpp; sourceTree = "<group>"; };
181 37D927D50F21331F001D4494 /* datavector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = datavector.hpp; sourceTree = "<group>"; };
182 37D927D60F21331F001D4494 /* display.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = display.h; sourceTree = "<group>"; };
183 37D927D70F21331F001D4494 /* engine.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = engine.cpp; sourceTree = "<group>"; };
184 37D927D80F21331F001D4494 /* engine.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = engine.hpp; sourceTree = "<group>"; };
185 37D927D90F21331F001D4494 /* errorchecking.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = errorchecking.cpp; sourceTree = "<group>"; };
186 37D927DA0F21331F001D4494 /* errorchecking.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = errorchecking.h; sourceTree = "<group>"; };
187 37D927DB0F21331F001D4494 /* fastamap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fastamap.cpp; sourceTree = "<group>"; };
188 37D927DC0F21331F001D4494 /* fastamap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fastamap.h; sourceTree = "<group>"; };
189 37D927DD0F21331F001D4494 /* fileoutput.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fileoutput.cpp; sourceTree = "<group>"; };
190 37D927DE0F21331F001D4494 /* fileoutput.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fileoutput.h; sourceTree = "<group>"; };
191 37D927DF0F21331F001D4494 /* globaldata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = globaldata.cpp; sourceTree = "<group>"; };
192 37D927E00F21331F001D4494 /* globaldata.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = globaldata.hpp; sourceTree = "<group>"; };
193 37D927E10F21331F001D4494 /* groupmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = groupmap.cpp; sourceTree = "<group>"; };
194 37D927E20F21331F001D4494 /* groupmap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = groupmap.h; sourceTree = "<group>"; };
195 37D927E30F21331F001D4494 /* helpcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = helpcommand.cpp; sourceTree = "<group>"; };
196 37D927E40F21331F001D4494 /* helpcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = helpcommand.h; sourceTree = "<group>"; };
197 37D927E50F21331F001D4494 /* inputdata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = inputdata.cpp; sourceTree = "<group>"; };
198 37D927E60F21331F001D4494 /* inputdata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = inputdata.h; sourceTree = "<group>"; };
199 37D927E70F21331F001D4494 /* jackknife.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = jackknife.cpp; sourceTree = "<group>"; };
200 37D927E80F21331F001D4494 /* jackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = jackknife.h; sourceTree = "<group>"; };
201 37D927E90F21331F001D4494 /* kmer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmer.cpp; sourceTree = "<group>"; };
202 37D927EA0F21331F001D4494 /* kmer.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmer.hpp; sourceTree = "<group>"; };
203 37D927EB0F21331F001D4494 /* kmerdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmerdb.cpp; sourceTree = "<group>"; };
204 37D927EC0F21331F001D4494 /* kmerdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmerdb.hpp; sourceTree = "<group>"; };
205 37D927ED0F21331F001D4494 /* listvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = listvector.cpp; sourceTree = "<group>"; };
206 37D927EE0F21331F001D4494 /* listvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = listvector.hpp; sourceTree = "<group>"; };
207 37D927EF0F21331F001D4494 /* mothur.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothur.cpp; sourceTree = "<group>"; };
208 37D927F00F21331F001D4494 /* nameassignment.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nameassignment.cpp; sourceTree = "<group>"; };
209 37D927F10F21331F001D4494 /* nameassignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = nameassignment.hpp; sourceTree = "<group>"; };
210 37D927F20F21331F001D4494 /* nocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nocommand.cpp; sourceTree = "<group>"; };
211 37D927F30F21331F001D4494 /* nocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nocommand.h; sourceTree = "<group>"; };
212 37D927F40F21331F001D4494 /* npshannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = npshannon.cpp; sourceTree = "<group>"; };
213 37D927F50F21331F001D4494 /* npshannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = npshannon.h; sourceTree = "<group>"; };
214 37D927F60F21331F001D4494 /* observable.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = observable.h; sourceTree = "<group>"; };
215 37D927F70F21331F001D4494 /* ordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ordervector.cpp; sourceTree = "<group>"; };
216 37D927F80F21331F001D4494 /* ordervector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = ordervector.hpp; sourceTree = "<group>"; };
217 37D927F90F21331F001D4494 /* parselistcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parselistcommand.cpp; sourceTree = "<group>"; };
218 37D927FA0F21331F001D4494 /* parselistcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parselistcommand.h; sourceTree = "<group>"; };
219 37D927FB0F21331F001D4494 /* progress.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = progress.cpp; sourceTree = "<group>"; };
220 37D927FC0F21331F001D4494 /* progress.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = progress.hpp; sourceTree = "<group>"; };
221 37D927FD0F21331F001D4494 /* quitcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = quitcommand.cpp; sourceTree = "<group>"; };
222 37D927FE0F21331F001D4494 /* quitcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = quitcommand.h; sourceTree = "<group>"; };
223 37D927FF0F21331F001D4494 /* rabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rabundvector.cpp; sourceTree = "<group>"; };
224 37D928000F21331F001D4494 /* rabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = rabundvector.hpp; sourceTree = "<group>"; };
225 37D928010F21331F001D4494 /* rarecalc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarecalc.cpp; sourceTree = "<group>"; };
226 37D928020F21331F001D4494 /* rarecalc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarecalc.h; sourceTree = "<group>"; };
227 37D928030F21331F001D4494 /* raredisplay.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = raredisplay.cpp; sourceTree = "<group>"; };
228 37D928040F21331F001D4494 /* raredisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = raredisplay.h; sourceTree = "<group>"; };
229 37D928050F21331F001D4494 /* rarefact.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefact.cpp; sourceTree = "<group>"; };
230 37D928060F21331F001D4494 /* rarefact.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefact.h; sourceTree = "<group>"; };
231 37D928070F21331F001D4494 /* rarefactcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactcommand.cpp; sourceTree = "<group>"; };
232 37D928080F21331F001D4494 /* rarefactcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactcommand.h; sourceTree = "<group>"; };
233 37D928090F21331F001D4494 /* rarefactioncurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactioncurvedata.h; sourceTree = "<group>"; };
234 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactsharedcommand.cpp; sourceTree = "<group>"; };
235 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactsharedcommand.h; sourceTree = "<group>"; };
236 37D928120F21331F001D4494 /* readmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readmatrix.cpp; sourceTree = "<group>"; };
237 37D928130F21331F001D4494 /* readmatrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = readmatrix.hpp; sourceTree = "<group>"; };
238 37D9281A0F21331F001D4494 /* sabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sabundvector.cpp; sourceTree = "<group>"; };
239 37D9281B0F21331F001D4494 /* sabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sabundvector.hpp; sourceTree = "<group>"; };
240 37D9281C0F21331F001D4494 /* sequence.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequence.cpp; sourceTree = "<group>"; };
241 37D9281D0F21331F001D4494 /* sequence.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sequence.hpp; sourceTree = "<group>"; };
242 37D9281E0F21331F001D4494 /* shannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shannon.cpp; sourceTree = "<group>"; };
243 37D9281F0F21331F001D4494 /* shannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shannon.h; sourceTree = "<group>"; };
244 37D928200F21331F001D4494 /* shared.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shared.cpp; sourceTree = "<group>"; };
245 37D928210F21331F001D4494 /* shared.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shared.h; sourceTree = "<group>"; };
246 37D928220F21331F001D4494 /* sharedace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedace.cpp; sourceTree = "<group>"; };
247 37D928230F21331F001D4494 /* sharedace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedace.h; sourceTree = "<group>"; };
248 37D928240F21331F001D4494 /* sharedchao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedchao1.cpp; sourceTree = "<group>"; };
249 37D928250F21331F001D4494 /* sharedchao1.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedchao1.h; sourceTree = "<group>"; };
250 37D928260F21331F001D4494 /* sharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedcommand.cpp; sourceTree = "<group>"; };
251 37D928270F21331F001D4494 /* sharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedcommand.h; sourceTree = "<group>"; };
252 37D928280F21331F001D4494 /* sharedjabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjabund.cpp; sourceTree = "<group>"; };
253 37D928290F21331F001D4494 /* sharedjabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjabund.h; sourceTree = "<group>"; };
254 37D9282A0F21331F001D4494 /* sharedjclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjclass.cpp; sourceTree = "<group>"; };
255 37D9282B0F21331F001D4494 /* sharedjclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjclass.h; sourceTree = "<group>"; };
256 37D9282C0F21331F001D4494 /* sharedjest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjest.cpp; sourceTree = "<group>"; };
257 37D9282D0F21331F001D4494 /* sharedjest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjest.h; sourceTree = "<group>"; };
258 37D9282E0F21331F001D4494 /* sharedordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedordervector.cpp; sourceTree = "<group>"; };
259 37D9282F0F21331F001D4494 /* sharedordervector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedordervector.h; sourceTree = "<group>"; };
260 37D928300F21331F001D4494 /* sharedrabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedrabundvector.cpp; sourceTree = "<group>"; };
261 37D928310F21331F001D4494 /* sharedrabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedrabundvector.h; sourceTree = "<group>"; };
262 37D928320F21331F001D4494 /* sharedsabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsabundvector.cpp; sourceTree = "<group>"; };
263 37D928330F21331F001D4494 /* sharedsabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsabundvector.h; sourceTree = "<group>"; };
264 37D928340F21331F001D4494 /* sharedsobs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsobs.cpp; sourceTree = "<group>"; };
265 37D928350F21331F001D4494 /* sharedsobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsobs.h; sourceTree = "<group>"; };
266 37D928360F21331F001D4494 /* sharedsorabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorabund.cpp; sourceTree = "<group>"; };
267 37D928370F21331F001D4494 /* sharedsorabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorabund.h; sourceTree = "<group>"; };
268 37D928380F21331F001D4494 /* sharedsorclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorclass.cpp; sourceTree = "<group>"; };
269 37D928390F21331F001D4494 /* sharedsorclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorclass.h; sourceTree = "<group>"; };
270 37D9283A0F21331F001D4494 /* sharedsorest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorest.cpp; sourceTree = "<group>"; };
271 37D9283B0F21331F001D4494 /* sharedsorest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorest.h; sourceTree = "<group>"; };
272 37D9283C0F21331F001D4494 /* sharedthetan.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetan.cpp; sourceTree = "<group>"; };
273 37D9283D0F21331F001D4494 /* sharedthetan.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetan.h; sourceTree = "<group>"; };
274 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetayc.cpp; sourceTree = "<group>"; };
275 37D9283F0F21331F001D4494 /* sharedthetayc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetayc.h; sourceTree = "<group>"; };
276 37D928400F21331F001D4494 /* simpson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = simpson.cpp; sourceTree = "<group>"; };
277 37D928410F21331F001D4494 /* simpson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = simpson.h; sourceTree = "<group>"; };
278 37D928420F21331F001D4494 /* singlelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = singlelinkage.cpp; sourceTree = "<group>"; };
279 37D928430F21331F001D4494 /* sobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sobs.h; sourceTree = "<group>"; };
280 37D928440F21331F001D4494 /* sparsematrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sparsematrix.cpp; sourceTree = "<group>"; };
281 37D928450F21331F001D4494 /* sparsematrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sparsematrix.hpp; sourceTree = "<group>"; };
282 37D928460F21331F001D4494 /* summarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarycommand.cpp; sourceTree = "<group>"; };
283 37D928470F21331F001D4494 /* summarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarycommand.h; sourceTree = "<group>"; };
284 37D928480F21331F001D4494 /* summarydata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarydata.h; sourceTree = "<group>"; };
285 37D928490F21331F001D4494 /* summarydisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarydisplay.h; sourceTree = "<group>"; };
286 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarysharedcommand.cpp; sourceTree = "<group>"; };
287 37D9284B0F21331F001D4494 /* summarysharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarysharedcommand.h; sourceTree = "<group>"; };
288 37D9284C0F21331F001D4494 /* utilities.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = utilities.hpp; sourceTree = "<group>"; };
289 37D9284D0F21331F001D4494 /* uvest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = uvest.cpp; sourceTree = "<group>"; };
290 37D9284E0F21331F001D4494 /* uvest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = uvest.h; sourceTree = "<group>"; };
291 37D9284F0F21331F001D4494 /* validcalculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validcalculator.cpp; sourceTree = "<group>"; };
292 37D928500F21331F001D4494 /* validcalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validcalculator.h; sourceTree = "<group>"; };
293 37D928510F21331F001D4494 /* validcommands.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validcommands.cpp; sourceTree = "<group>"; };
294 37D928520F21331F001D4494 /* validcommands.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validcommands.h; sourceTree = "<group>"; };
295 37D928530F21331F001D4494 /* validparameter.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validparameter.cpp; sourceTree = "<group>"; };
296 37D928540F21331F001D4494 /* validparameter.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validparameter.h; sourceTree = "<group>"; };
297 37E3ED800F4D9D0D00B5DF02 /* mothur.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mothur.h; sourceTree = "<group>"; };
298 37E5F3E10F29FD4200F8D827 /* treenode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treenode.h; sourceTree = "<group>"; };
299 37E5F3E20F29FD4200F8D827 /* treenode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treenode.cpp; sourceTree = "<group>"; };
300 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readtreecommand.h; sourceTree = "<group>"; };
301 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readtreecommand.cpp; sourceTree = "<group>"; };
302 8DD76F6C0486A84900D96B5E /* mothur */ = {isa = PBXFileReference; explicitFileType = "compiled.mach-o.executable"; includeInIndex = 0; path = mothur; sourceTree = BUILT_PRODUCTS_DIR; };
303 A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getgroupcommand.cpp; sourceTree = "<group>"; };
304 A70B53A50F4CD7AD0064797E /* getgroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getgroupcommand.h; sourceTree = "<group>"; };
305 A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlabelcommand.cpp; sourceTree = "<group>"; };
306 A70B53A70F4CD7AD0064797E /* getlabelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlabelcommand.h; sourceTree = "<group>"; };
307 A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlinecommand.cpp; sourceTree = "<group>"; };
308 A70B53A90F4CD7AD0064797E /* getlinecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlinecommand.h; sourceTree = "<group>"; };
309 C6859E8B029090EE04C91782 /* Mothur.1 */ = {isa = PBXFileReference; lastKnownFileType = text.man; path = Mothur.1; sourceTree = "<group>"; };
310 EB1216860F619B83004A865F /* bergerparker.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bergerparker.h; sourceTree = "<group>"; };
311 EB1216870F619B83004A865F /* bergerparker.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bergerparker.cpp; sourceTree = "<group>"; };
312 EB1216E30F61ACFB004A865F /* bstick.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bstick.h; sourceTree = "<group>"; };
313 EB1216E40F61ACFB004A865F /* bstick.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bstick.cpp; sourceTree = "<group>"; };
314 EB1217210F61C9AC004A865F /* sharedkstest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkstest.h; sourceTree = "<group>"; };
315 EB1217220F61C9AC004A865F /* sharedkstest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkstest.cpp; sourceTree = "<group>"; };
316 EB6E68170F5F1C780044E17B /* qstat.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = qstat.h; sourceTree = "<group>"; };
317 EB6E68180F5F1C780044E17B /* qstat.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = qstat.cpp; sourceTree = "<group>"; };
318 EB6F01590F6AC1670048081A /* sharedbdiversity.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedbdiversity.h; sourceTree = "<group>"; };
319 EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedbdiversity.cpp; sourceTree = "<group>"; };
320 EB9303E90F534D9400E8EF26 /* logsd.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = logsd.h; sourceTree = "<group>"; };
321 EB9303EA0F534D9400E8EF26 /* logsd.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = logsd.cpp; sourceTree = "<group>"; };
322 EB9303F70F53517300E8EF26 /* geom.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = geom.h; sourceTree = "<group>"; };
323 EB9303F80F53517300E8EF26 /* geom.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = geom.cpp; sourceTree = "<group>"; };
324 EBE2A41C0F7D5C5C00A54BF8 /* jackknife2.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = jackknife2.h; path = ../jackknife2.h; sourceTree = SOURCE_ROOT; };
325 EBE2A41D0F7D5C6100A54BF8 /* jackknife2.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = jackknife2.cpp; path = ../jackknife2.cpp; sourceTree = SOURCE_ROOT; };
326 /* End PBXFileReference section */
328 /* Begin PBXFrameworksBuildPhase section */
329 8DD76F660486A84900D96B5E /* Frameworks */ = {
330 isa = PBXFrameworksBuildPhase;
331 buildActionMask = 2147483647;
334 runOnlyForDeploymentPostprocessing = 0;
336 /* End PBXFrameworksBuildPhase section */
338 /* Begin PBXGroup section */
339 08FB7794FE84155DC02AAC07 /* Mothur */ = {
342 08FB7795FE84155DC02AAC07 /* Source */,
343 C6859E8C029090F304C91782 /* Documentation */,
344 1AB674ADFE9D54B511CA2CBB /* Products */,
347 sourceTree = "<group>";
349 08FB7795FE84155DC02AAC07 /* Source */ = {
352 37D927BA0F21331F001D4494 /* averagelinkage.cpp */,
353 37D928A60F2133C0001D4494 /* calculators */,
354 37D927C20F21331F001D4494 /* cluster.hpp */,
355 37D927C10F21331F001D4494 /* cluster.cpp */,
356 37D928A90F2133E5001D4494 /* commands */,
357 37D927C60F21331F001D4494 /* collect.h */,
358 37D927C50F21331F001D4494 /* collect.cpp */,
359 37D927C90F21331F001D4494 /* collectdisplay.h */,
360 37D928AC0F213420001D4494 /* containers */,
361 37D927CA0F21331F001D4494 /* collectorscurvedata.h */,
362 37D927CF0F21331F001D4494 /* commandfactory.hpp */,
363 372E12EC0F264D320095CF7E /* commandfactory.cpp */,
364 37D927D10F21331F001D4494 /* commandoptionparser.hpp */,
365 37D927D00F21331F001D4494 /* commandoptionparser.cpp */,
366 37D927D20F21331F001D4494 /* completelinkage.cpp */,
367 37D927D40F21331F001D4494 /* database.hpp */,
368 37D927D30F21331F001D4494 /* database.cpp */,
369 37D927D60F21331F001D4494 /* display.h */,
370 37D927D80F21331F001D4494 /* engine.hpp */,
371 37D927D70F21331F001D4494 /* engine.cpp */,
372 37D928B10F213472001D4494 /* errorcheckor */,
373 37D927DE0F21331F001D4494 /* fileoutput.h */,
374 37D927DD0F21331F001D4494 /* fileoutput.cpp */,
375 37D927E00F21331F001D4494 /* globaldata.hpp */,
376 37D927DF0F21331F001D4494 /* globaldata.cpp */,
377 37D927E60F21331F001D4494 /* inputdata.h */,
378 37D927E50F21331F001D4494 /* inputdata.cpp */,
379 37D927EA0F21331F001D4494 /* kmer.hpp */,
380 37D927E90F21331F001D4494 /* kmer.cpp */,
381 37D927EC0F21331F001D4494 /* kmerdb.hpp */,
382 37D927EB0F21331F001D4494 /* kmerdb.cpp */,
383 37E3ED800F4D9D0D00B5DF02 /* mothur.h */,
384 37D927EF0F21331F001D4494 /* mothur.cpp */,
385 37D927F10F21331F001D4494 /* nameassignment.hpp */,
386 37D927F00F21331F001D4494 /* nameassignment.cpp */,
387 37D927F60F21331F001D4494 /* observable.h */,
388 37D927FC0F21331F001D4494 /* progress.hpp */,
389 37D927FB0F21331F001D4494 /* progress.cpp */,
390 37D928040F21331F001D4494 /* raredisplay.h */,
391 37D928030F21331F001D4494 /* raredisplay.cpp */,
392 37D928060F21331F001D4494 /* rarefact.h */,
393 37D928050F21331F001D4494 /* rarefact.cpp */,
394 37D928090F21331F001D4494 /* rarefactioncurvedata.h */,
395 37D928130F21331F001D4494 /* readmatrix.hpp */,
396 37D928120F21331F001D4494 /* readmatrix.cpp */,
397 37AD4DC80F28F3DD00AA2D49 /* readtree.h */,
398 37AD4DC90F28F3DD00AA2D49 /* readtree.cpp */,
399 37D9281D0F21331F001D4494 /* sequence.hpp */,
400 37D9281C0F21331F001D4494 /* sequence.cpp */,
401 37D928210F21331F001D4494 /* shared.h */,
402 37D928200F21331F001D4494 /* shared.cpp */,
403 37D928420F21331F001D4494 /* singlelinkage.cpp */,
404 37D928450F21331F001D4494 /* sparsematrix.hpp */,
405 37D928440F21331F001D4494 /* sparsematrix.cpp */,
406 37D928480F21331F001D4494 /* summarydata.h */,
407 37D928490F21331F001D4494 /* summarydisplay.h */,
408 37D9284C0F21331F001D4494 /* utilities.hpp */,
411 sourceTree = "<group>";
413 1AB674ADFE9D54B511CA2CBB /* Products */ = {
416 8DD76F6C0486A84900D96B5E /* mothur */,
419 sourceTree = "<group>";
421 37D928A60F2133C0001D4494 /* calculators */ = {
424 37D927BE0F21331F001D4494 /* calculator.h */,
425 3792948D0F2E271100B9034A /* treecalculator.h */,
426 37D927BD0F21331F001D4494 /* calculator.cpp */,
427 37D927B90F21331F001D4494 /* ace.h */,
428 37D927B80F21331F001D4494 /* ace.cpp */,
429 37D927BC0F21331F001D4494 /* bootstrap.h */,
430 37D927BB0F21331F001D4494 /* bootstrap.cpp */,
431 37D927C00F21331F001D4494 /* chao1.h */,
432 37D927BF0F21331F001D4494 /* chao1.cpp */,
433 EB9303F70F53517300E8EF26 /* geom.h */,
434 EB9303F80F53517300E8EF26 /* geom.cpp */,
435 EB6E68170F5F1C780044E17B /* qstat.h */,
436 EB6E68180F5F1C780044E17B /* qstat.cpp */,
437 EB9303E90F534D9400E8EF26 /* logsd.h */,
438 EB9303EA0F534D9400E8EF26 /* logsd.cpp */,
439 EB1216860F619B83004A865F /* bergerparker.h */,
440 EB1216870F619B83004A865F /* bergerparker.cpp */,
441 EB1216E30F61ACFB004A865F /* bstick.h */,
442 EB1216E40F61ACFB004A865F /* bstick.cpp */,
443 EB1217210F61C9AC004A865F /* sharedkstest.h */,
444 EB1217220F61C9AC004A865F /* sharedkstest.cpp */,
445 EB6F01590F6AC1670048081A /* sharedbdiversity.h */,
446 EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */,
447 EBE2A41C0F7D5C5C00A54BF8 /* jackknife2.h */,
448 EBE2A41D0F7D5C6100A54BF8 /* jackknife2.cpp */,
449 37D927E80F21331F001D4494 /* jackknife.h */,
450 37D927E70F21331F001D4494 /* jackknife.cpp */,
451 37D927F50F21331F001D4494 /* npshannon.h */,
452 37D927F40F21331F001D4494 /* npshannon.cpp */,
453 379294880F2E258500B9034A /* parsimony.h */,
454 379294890F2E258500B9034A /* parsimony.cpp */,
455 37D928020F21331F001D4494 /* rarecalc.h */,
456 37D928010F21331F001D4494 /* rarecalc.cpp */,
457 37D9281F0F21331F001D4494 /* shannon.h */,
458 37D9281E0F21331F001D4494 /* shannon.cpp */,
459 37D928230F21331F001D4494 /* sharedace.h */,
460 37D928220F21331F001D4494 /* sharedace.cpp */,
461 37D928250F21331F001D4494 /* sharedchao1.h */,
462 37D928240F21331F001D4494 /* sharedchao1.cpp */,
463 37D928290F21331F001D4494 /* sharedjabund.h */,
464 37D928280F21331F001D4494 /* sharedjabund.cpp */,
465 37D9282B0F21331F001D4494 /* sharedjclass.h */,
466 37D9282A0F21331F001D4494 /* sharedjclass.cpp */,
467 37D9282D0F21331F001D4494 /* sharedjest.h */,
468 37D9282C0F21331F001D4494 /* sharedjest.cpp */,
469 37D928350F21331F001D4494 /* sharedsobs.h */,
470 37D928340F21331F001D4494 /* sharedsobs.cpp */,
471 37AFC71D0F445386005F492D /* sharedsobscollectsummary.h */,
472 37AFC71E0F445386005F492D /* sharedsobscollectsummary.cpp */,
473 37D928370F21331F001D4494 /* sharedsorabund.h */,
474 37D928360F21331F001D4494 /* sharedsorabund.cpp */,
475 37D928390F21331F001D4494 /* sharedsorclass.h */,
476 37D928380F21331F001D4494 /* sharedsorclass.cpp */,
477 37D9283B0F21331F001D4494 /* sharedsorest.h */,
478 37D9283A0F21331F001D4494 /* sharedsorest.cpp */,
479 37D9283D0F21331F001D4494 /* sharedthetan.h */,
480 37D9283C0F21331F001D4494 /* sharedthetan.cpp */,
481 37D9283F0F21331F001D4494 /* sharedthetayc.h */,
482 37D9283E0F21331F001D4494 /* sharedthetayc.cpp */,
483 37D928410F21331F001D4494 /* simpson.h */,
484 37D928400F21331F001D4494 /* simpson.cpp */,
485 37D928430F21331F001D4494 /* sobs.h */,
486 374610810F40652400460C57 /* unweighted.h */,
487 374610820F40652400460C57 /* unweighted.cpp */,
488 37D9284E0F21331F001D4494 /* uvest.h */,
489 37D9284D0F21331F001D4494 /* uvest.cpp */,
490 3746107C0F4064D100460C57 /* weighted.h */,
491 3746107D0F4064D100460C57 /* weighted.cpp */,
494 sourceTree = "<group>";
496 37D928A90F2133E5001D4494 /* commands */ = {
499 37D927CD0F21331F001D4494 /* command.hpp */,
500 37D927C40F21331F001D4494 /* clustercommand.h */,
501 37D927C30F21331F001D4494 /* clustercommand.cpp */,
502 37D927C80F21331F001D4494 /* collectcommand.h */,
503 37D927C70F21331F001D4494 /* collectcommand.cpp */,
504 37D927CC0F21331F001D4494 /* collectsharedcommand.h */,
505 37D927CB0F21331F001D4494 /* collectsharedcommand.cpp */,
506 37B28F660F27590100808A62 /* deconvolutecommand.h */,
507 37B28F670F27590100808A62 /* deconvolutecommand.cpp */,
508 A70B53A50F4CD7AD0064797E /* getgroupcommand.h */,
509 A70B53A40F4CD7AD0064797E /* getgroupcommand.cpp */,
510 A70B53A70F4CD7AD0064797E /* getlabelcommand.h */,
511 A70B53A60F4CD7AD0064797E /* getlabelcommand.cpp */,
512 A70B53A90F4CD7AD0064797E /* getlinecommand.h */,
513 A70B53A80F4CD7AD0064797E /* getlinecommand.cpp */,
514 37D927E40F21331F001D4494 /* helpcommand.h */,
515 37D927E30F21331F001D4494 /* helpcommand.cpp */,
516 37D927F30F21331F001D4494 /* nocommand.h */,
517 37D927F20F21331F001D4494 /* nocommand.cpp */,
518 37D927FA0F21331F001D4494 /* parselistcommand.h */,
519 37D927F90F21331F001D4494 /* parselistcommand.cpp */,
520 3792946E0F2E191800B9034A /* parsimonycommand.h */,
521 3792946F0F2E191800B9034A /* parsimonycommand.cpp */,
522 37D927FE0F21331F001D4494 /* quitcommand.h */,
523 37D927FD0F21331F001D4494 /* quitcommand.cpp */,
524 37D928080F21331F001D4494 /* rarefactcommand.h */,
525 37D928070F21331F001D4494 /* rarefactcommand.cpp */,
526 37D9280B0F21331F001D4494 /* rarefactsharedcommand.h */,
527 37D9280A0F21331F001D4494 /* rarefactsharedcommand.cpp */,
528 372E12940F263D5A0095CF7E /* readdistcommand.h */,
529 372E12950F263D5A0095CF7E /* readdistcommand.cpp */,
530 372E126E0F26365B0095CF7E /* readotucommand.h */,
531 372E126F0F26365B0095CF7E /* readotucommand.cpp */,
532 37E5F4900F2A3DA800F8D827 /* readtreecommand.h */,
533 37E5F4910F2A3DA800F8D827 /* readtreecommand.cpp */,
534 37D928270F21331F001D4494 /* sharedcommand.h */,
535 37D928260F21331F001D4494 /* sharedcommand.cpp */,
536 37D928470F21331F001D4494 /* summarycommand.h */,
537 37D928460F21331F001D4494 /* summarycommand.cpp */,
538 37D9284B0F21331F001D4494 /* summarysharedcommand.h */,
539 37D9284A0F21331F001D4494 /* summarysharedcommand.cpp */,
540 3746109B0F40657600460C57 /* unifracunweightedcommand.h */,
541 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */,
542 374610760F40645300460C57 /* unifracweightedcommand.h */,
543 374610770F40645300460C57 /* unifracweightedcommand.cpp */,
546 sourceTree = "<group>";
548 37D928AC0F213420001D4494 /* containers */ = {
551 37D927D50F21331F001D4494 /* datavector.hpp */,
552 37D927DC0F21331F001D4494 /* fastamap.h */,
553 37D927DB0F21331F001D4494 /* fastamap.cpp */,
554 37D927E20F21331F001D4494 /* groupmap.h */,
555 37D927E10F21331F001D4494 /* groupmap.cpp */,
556 37D927EE0F21331F001D4494 /* listvector.hpp */,
557 37D927ED0F21331F001D4494 /* listvector.cpp */,
558 37D927F80F21331F001D4494 /* ordervector.hpp */,
559 37D927F70F21331F001D4494 /* ordervector.cpp */,
560 37D928000F21331F001D4494 /* rabundvector.hpp */,
561 37D927FF0F21331F001D4494 /* rabundvector.cpp */,
562 37D9281B0F21331F001D4494 /* sabundvector.hpp */,
563 37D9281A0F21331F001D4494 /* sabundvector.cpp */,
564 37AD4CE20F28AEA300AA2D49 /* sharedlistvector.h */,
565 37AD4CE30F28AEA300AA2D49 /* sharedlistvector.cpp */,
566 37D9282F0F21331F001D4494 /* sharedordervector.h */,
567 37D9282E0F21331F001D4494 /* sharedordervector.cpp */,
568 37D928310F21331F001D4494 /* sharedrabundvector.h */,
569 37D928300F21331F001D4494 /* sharedrabundvector.cpp */,
570 37D928330F21331F001D4494 /* sharedsabundvector.h */,
571 37D928320F21331F001D4494 /* sharedsabundvector.cpp */,
572 37AD4DB90F28E2FE00AA2D49 /* tree.h */,
573 37AD4DBA0F28E2FE00AA2D49 /* tree.cpp */,
574 379293C10F2DE73400B9034A /* treemap.h */,
575 379293C20F2DE73400B9034A /* treemap.cpp */,
576 37E5F3E10F29FD4200F8D827 /* treenode.h */,
577 37E5F3E20F29FD4200F8D827 /* treenode.cpp */,
580 sourceTree = "<group>";
582 37D928B10F213472001D4494 /* errorcheckor */ = {
585 37D927DA0F21331F001D4494 /* errorchecking.h */,
586 37D927D90F21331F001D4494 /* errorchecking.cpp */,
587 37D928500F21331F001D4494 /* validcalculator.h */,
588 37D9284F0F21331F001D4494 /* validcalculator.cpp */,
589 37D928520F21331F001D4494 /* validcommands.h */,
590 37D928510F21331F001D4494 /* validcommands.cpp */,
591 37D928540F21331F001D4494 /* validparameter.h */,
592 37D928530F21331F001D4494 /* validparameter.cpp */,
595 sourceTree = "<group>";
597 C6859E8C029090F304C91782 /* Documentation */ = {
600 C6859E8B029090EE04C91782 /* Mothur.1 */,
602 name = Documentation;
603 sourceTree = "<group>";
605 /* End PBXGroup section */
607 /* Begin PBXNativeTarget section */
608 8DD76F620486A84900D96B5E /* mothur */ = {
609 isa = PBXNativeTarget;
610 buildConfigurationList = 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */;
612 8DD76F640486A84900D96B5E /* Sources */,
613 8DD76F660486A84900D96B5E /* Frameworks */,
614 8DD76F690486A84900D96B5E /* CopyFiles */,
621 productInstallPath = "$(HOME)/bin";
622 productName = Mothur;
623 productReference = 8DD76F6C0486A84900D96B5E /* mothur */;
624 productType = "com.apple.product-type.tool";
626 /* End PBXNativeTarget section */
628 /* Begin PBXProject section */
629 08FB7793FE84155DC02AAC07 /* Project object */ = {
631 buildConfigurationList = 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */;
632 compatibilityVersion = "Xcode 3.0";
633 hasScannedForEncodings = 1;
634 mainGroup = 08FB7794FE84155DC02AAC07 /* Mothur */;
638 8DD76F620486A84900D96B5E /* mothur */,
641 /* End PBXProject section */
643 /* Begin PBXSourcesBuildPhase section */
644 8DD76F640486A84900D96B5E /* Sources */ = {
645 isa = PBXSourcesBuildPhase;
646 buildActionMask = 2147483647;
648 37D928550F21331F001D4494 /* ace.cpp in Sources */,
649 37D928560F21331F001D4494 /* averagelinkage.cpp in Sources */,
650 37D928570F21331F001D4494 /* bootstrap.cpp in Sources */,
651 37D928580F21331F001D4494 /* calculator.cpp in Sources */,
652 37D928590F21331F001D4494 /* chao1.cpp in Sources */,
653 37D9285A0F21331F001D4494 /* cluster.cpp in Sources */,
654 37D9285B0F21331F001D4494 /* clustercommand.cpp in Sources */,
655 37D9285C0F21331F001D4494 /* collect.cpp in Sources */,
656 37D9285D0F21331F001D4494 /* collectcommand.cpp in Sources */,
657 37D9285E0F21331F001D4494 /* collectsharedcommand.cpp in Sources */,
658 37D928600F21331F001D4494 /* commandoptionparser.cpp in Sources */,
659 37D928610F21331F001D4494 /* completelinkage.cpp in Sources */,
660 37D928620F21331F001D4494 /* database.cpp in Sources */,
661 37D928630F21331F001D4494 /* engine.cpp in Sources */,
662 37D928640F21331F001D4494 /* errorchecking.cpp in Sources */,
663 37D928650F21331F001D4494 /* fastamap.cpp in Sources */,
664 37D928660F21331F001D4494 /* fileoutput.cpp in Sources */,
665 37D928670F21331F001D4494 /* globaldata.cpp in Sources */,
666 37D928680F21331F001D4494 /* groupmap.cpp in Sources */,
667 37D928690F21331F001D4494 /* helpcommand.cpp in Sources */,
668 37D9286A0F21331F001D4494 /* inputdata.cpp in Sources */,
669 37D9286B0F21331F001D4494 /* jackknife.cpp in Sources */,
670 37D9286C0F21331F001D4494 /* kmer.cpp in Sources */,
671 37D9286D0F21331F001D4494 /* kmerdb.cpp in Sources */,
672 37D9286E0F21331F001D4494 /* listvector.cpp in Sources */,
673 37D9286F0F21331F001D4494 /* mothur.cpp in Sources */,
674 37D928700F21331F001D4494 /* nameassignment.cpp in Sources */,
675 37D928710F21331F001D4494 /* nocommand.cpp in Sources */,
676 37D928720F21331F001D4494 /* npshannon.cpp in Sources */,
677 37D928730F21331F001D4494 /* ordervector.cpp in Sources */,
678 37D928740F21331F001D4494 /* parselistcommand.cpp in Sources */,
679 37D928750F21331F001D4494 /* progress.cpp in Sources */,
680 37D928760F21331F001D4494 /* quitcommand.cpp in Sources */,
681 37D928770F21331F001D4494 /* rabundvector.cpp in Sources */,
682 37D928780F21331F001D4494 /* rarecalc.cpp in Sources */,
683 37D928790F21331F001D4494 /* raredisplay.cpp in Sources */,
684 37D9287A0F21331F001D4494 /* rarefact.cpp in Sources */,
685 37D9287B0F21331F001D4494 /* rarefactcommand.cpp in Sources */,
686 37D9287C0F21331F001D4494 /* rarefactsharedcommand.cpp in Sources */,
687 37D928800F21331F001D4494 /* readmatrix.cpp in Sources */,
688 37D928840F21331F001D4494 /* sabundvector.cpp in Sources */,
689 37D928850F21331F001D4494 /* sequence.cpp in Sources */,
690 37D928860F21331F001D4494 /* shannon.cpp in Sources */,
691 37D928870F21331F001D4494 /* shared.cpp in Sources */,
692 37D928880F21331F001D4494 /* sharedace.cpp in Sources */,
693 37D928890F21331F001D4494 /* sharedchao1.cpp in Sources */,
694 37D9288A0F21331F001D4494 /* sharedcommand.cpp in Sources */,
695 37D9288B0F21331F001D4494 /* sharedjabund.cpp in Sources */,
696 37D9288C0F21331F001D4494 /* sharedjclass.cpp in Sources */,
697 37D9288D0F21331F001D4494 /* sharedjest.cpp in Sources */,
698 37D9288E0F21331F001D4494 /* sharedordervector.cpp in Sources */,
699 37D9288F0F21331F001D4494 /* sharedrabundvector.cpp in Sources */,
700 37D928900F21331F001D4494 /* sharedsabundvector.cpp in Sources */,
701 37D928910F21331F001D4494 /* sharedsobs.cpp in Sources */,
702 37D928920F21331F001D4494 /* sharedsorabund.cpp in Sources */,
703 37D928930F21331F001D4494 /* sharedsorclass.cpp in Sources */,
704 37D928940F21331F001D4494 /* sharedsorest.cpp in Sources */,
705 37D928950F21331F001D4494 /* sharedthetan.cpp in Sources */,
706 37D928960F21331F001D4494 /* sharedthetayc.cpp in Sources */,
707 37D928970F21331F001D4494 /* simpson.cpp in Sources */,
708 37D928980F21331F001D4494 /* singlelinkage.cpp in Sources */,
709 37D928990F21331F001D4494 /* sparsematrix.cpp in Sources */,
710 37D9289A0F21331F001D4494 /* summarycommand.cpp in Sources */,
711 37D9289B0F21331F001D4494 /* summarysharedcommand.cpp in Sources */,
712 37D9289C0F21331F001D4494 /* uvest.cpp in Sources */,
713 37D9289D0F21331F001D4494 /* validcalculator.cpp in Sources */,
714 37D9289E0F21331F001D4494 /* validcommands.cpp in Sources */,
715 37D9289F0F21331F001D4494 /* validparameter.cpp in Sources */,
716 372E12700F26365B0095CF7E /* readotucommand.cpp in Sources */,
717 372E12960F263D5A0095CF7E /* readdistcommand.cpp in Sources */,
718 372E12ED0F264D320095CF7E /* commandfactory.cpp in Sources */,
719 37B28F680F27590100808A62 /* deconvolutecommand.cpp in Sources */,
720 37AD4CE40F28AEA300AA2D49 /* sharedlistvector.cpp in Sources */,
721 37AD4DBB0F28E2FE00AA2D49 /* tree.cpp in Sources */,
722 37AD4DCA0F28F3DD00AA2D49 /* readtree.cpp in Sources */,
723 37E5F3E30F29FD4200F8D827 /* treenode.cpp in Sources */,
724 37E5F4920F2A3DA800F8D827 /* readtreecommand.cpp in Sources */,
725 379293C30F2DE73400B9034A /* treemap.cpp in Sources */,
726 379294700F2E191800B9034A /* parsimonycommand.cpp in Sources */,
727 3792948A0F2E258500B9034A /* parsimony.cpp in Sources */,
728 374610780F40645300460C57 /* unifracweightedcommand.cpp in Sources */,
729 3746107E0F4064D100460C57 /* weighted.cpp in Sources */,
730 374610830F40652400460C57 /* unweighted.cpp in Sources */,
731 3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */,
732 37AFC71F0F445386005F492D /* sharedsobscollectsummary.cpp in Sources */,
733 A70B53AA0F4CD7AD0064797E /* getgroupcommand.cpp in Sources */,
734 A70B53AB0F4CD7AD0064797E /* getlabelcommand.cpp in Sources */,
735 A70B53AC0F4CD7AD0064797E /* getlinecommand.cpp in Sources */,
736 EB9303EB0F534D9400E8EF26 /* logsd.cpp in Sources */,
737 EB9303F90F53517300E8EF26 /* geom.cpp in Sources */,
738 EB6E68190F5F1C780044E17B /* qstat.cpp in Sources */,
739 EB1216880F619B83004A865F /* bergerparker.cpp in Sources */,
740 EB1216E50F61ACFB004A865F /* bstick.cpp in Sources */,
741 EB1217230F61C9AC004A865F /* sharedkstest.cpp in Sources */,
742 EB6F015B0F6AC1670048081A /* sharedbdiversity.cpp in Sources */,
743 EBE2A41E0F7D5C6100A54BF8 /* jackknife2.cpp in Sources */,
745 runOnlyForDeploymentPostprocessing = 0;
747 /* End PBXSourcesBuildPhase section */
749 /* Begin XCBuildConfiguration section */
750 1DEB923208733DC60010E9CD /* Debug */ = {
751 isa = XCBuildConfiguration;
753 COPY_PHASE_STRIP = NO;
754 GCC_DYNAMIC_NO_PIC = NO;
755 GCC_ENABLE_FIX_AND_CONTINUE = YES;
756 GCC_MODEL_TUNING = G5;
757 GCC_OPTIMIZATION_LEVEL = 0;
758 GCC_PREPROCESSOR_DEFINITIONS = (
760 "_GLIBCXX_DEBUG_PEDANTIC=1",
762 INSTALL_PATH = /usr/local/bin;
763 PRODUCT_NAME = mothur;
768 1DEB923308733DC60010E9CD /* Release */ = {
769 isa = XCBuildConfiguration;
771 DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym";
772 GCC_MODEL_TUNING = G5;
773 INSTALL_PATH = /usr/local/bin;
774 PRODUCT_NAME = mothur;
778 1DEB923608733DC60010E9CD /* Debug */ = {
779 isa = XCBuildConfiguration;
781 GCC_OPTIMIZATION_LEVEL = 3;
782 GCC_WARN_ABOUT_RETURN_TYPE = YES;
783 GCC_WARN_UNUSED_VARIABLE = YES;
785 SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk";
789 1DEB923708733DC60010E9CD /* Release */ = {
790 isa = XCBuildConfiguration;
796 GCC_OPTIMIZATION_LEVEL = 0;
797 GCC_WARN_ABOUT_RETURN_TYPE = YES;
798 GCC_WARN_UNUSED_VARIABLE = YES;
800 SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.5.sdk";
804 /* End XCBuildConfiguration section */
806 /* Begin XCConfigurationList section */
807 1DEB923108733DC60010E9CD /* Build configuration list for PBXNativeTarget "mothur" */ = {
808 isa = XCConfigurationList;
809 buildConfigurations = (
810 1DEB923208733DC60010E9CD /* Debug */,
811 1DEB923308733DC60010E9CD /* Release */,
813 defaultConfigurationIsVisible = 0;
814 defaultConfigurationName = Release;
816 1DEB923508733DC60010E9CD /* Build configuration list for PBXProject "Mothur" */ = {
817 isa = XCConfigurationList;
818 buildConfigurations = (
819 1DEB923608733DC60010E9CD /* Debug */,
820 1DEB923708733DC60010E9CD /* Release */,
822 defaultConfigurationIsVisible = 0;
823 defaultConfigurationName = Release;
825 /* End XCConfigurationList section */
827 rootObject = 08FB7793FE84155DC02AAC07 /* Project object */;