1 #ifndef ALIGNERREFSEQPOLICY
2 #define ALIGNERREFSEQPOLICY
6 #include "RefSeqPolicy.h"
8 class AlignerRefSeqPolicy : public RefSeqPolicy {
10 std::string convert(const std::string& rawseq) {
11 int size = (int)rawseq.size();
12 std::string seq = rawseq;
13 for (int i = 0; i < size; i++)
14 if (seq[i] == 'N') seq[i] = 'G';