incorporation of nast-ier code / removed a cout

diff --git a/maligner.cpp b/maligner.cpp
index 599c78be2c5c69570cb0d96febfa861f90bb8eb5..52fd36f53f64af53858ff8002063fd77950ea14d 100644 (file)
--- a/maligner.cpp
+++ b/maligner.cpp
@@ -150,7 +150,7 @@ string Maligner::chimeraMaligner(int chimeraPenalty, DeCalculator* decalc) {
                        
                        temp.queryToParentLocal = computePercentID(queryInRegion, parentInRegion);
                        
-                       cout << temp.parent << '\t' << "NAST:" << temp.nastRegionStart << '-' << temp.nastRegionEnd << " G:" << temp.queryToParent << " L:" << temp.queryToParentLocal << endl;
+//                     cout << temp.parent << '\t' << "NAST:" << temp.nastRegionStart << '-' << temp.nastRegionEnd << " G:" << temp.queryToParent << " L:" << temp.queryToParentLocal << endl;
                        outputResults.push_back(temp);
                }