1 #ifndef VALIDPARAMETERS_H
2 #define VALIDPARAMETERS_H
8 * Created by Sarah Westcott on 1/5/09.
9 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
16 //This class contains a list of all valid parameters in Mothur.
17 //It has a function which will tell you if your parameter is valid.
18 //When adding a new parameter you must add it to the valid list in the class constructor.
21 class ValidParameters {
26 bool isValidParameter(string, string);
29 map<string, string> readdist;
30 map<string, string> readotu;
31 map<string, string> readtree;
32 map<string, string> cluster;
33 map<string, string> deconvolute;
34 map<string, string> parsimony;
35 map<string, string> collectsingle;
36 map<string, string> collectshared;
37 map<string, string> rarefactsingle;
38 map<string, string> rarefactshared;
39 map<string, string> summarysingle;
40 map<string, string> summaryshared;
41 map<string, string> unifracweighted;
42 map<string, string> unifracunweighted;
43 map<string, string> libshuff;
45 map<string, string>::iterator it;
47 void initialReaddist();
48 void initialReadotu();
49 void initialReadtree();
50 void initialCluster();
51 void initialDeconvolute();
52 void initialParsimony();
53 void initialCollectsingle();
54 void initialCollectshared();
55 void initialRarefactsingle();
56 void initialRarefactshared();
57 void initialSummarysingle();
58 void initialSummaryshared();
59 void initialUnifracweighted();
60 void initialUnifracunweighted();
61 void initialLibshuff();