1 #ifndef CHIMERASLAYER_H
2 #define CHIMERASLAYER_H
8 * Created by westcott on 9/25/09.
9 * Copyright 2009 Schloss Lab. All rights reserved.
18 /***********************************************************************/
19 //This class was modeled after the chimeraSlayer written by the Broad Institute
20 /***********************************************************************/
23 class ChimeraSlayer : public Chimera {
26 ChimeraSlayer(string, bool, string);
29 int getChimeras(Sequence*);
31 void printHeader(ostream&);
39 map<int, int> spotMap;
40 Database* databaseRight;
41 Database* databaseLeft;
43 vector<data_struct> chimeraResults;
44 string chimeraFlags, searchMethod, fastafile;
47 void printBlock(data_struct, ostream&);
51 /************************************************************************/