added more tests to slice_align

git-svn-id: http://biopieces.googlecode.com/svn/trunk@2267 74ccb610-7750-0410-82ae-013aeee3265d

diff --git a/bp_test/out/slice_align.out.4 b/bp_test/out/slice_align.out.4
new file mode 100644 (file)
index 0000000..563faf3
--- /dev/null
+++ b/bp_test/out/slice_align.out.4
@@ -0,0 +1,80 @@
+SEQ: GCTGGCG
+SEQ_NAME: ID00000000
+SEQ_LEN: 7
+---
+SEQ: GCTGGCG
+SEQ_NAME: ID00000001
+SEQ_LEN: 7
+---
+SEQ: GTT-GCG
+SEQ_NAME: ID00000002
+SEQ_LEN: 7
+---
+SEQ: GCTGGCG
+SEQ_NAME: ID00000003
+SEQ_LEN: 7
+---
+SEQ: GCTGGCG
+SEQ_NAME: ID00000004
+SEQ_LEN: 7
+---
+SEQ: GCTGGCG
+SEQ_NAME: ID00000005
+SEQ_LEN: 7
+---
+SEQ: GCTGGCG
+SEQ_NAME: ID00000006
+SEQ_LEN: 7
+---
+SEQ: GCTGGCG
+SEQ_NAME: ID00000007
+SEQ_LEN: 7
+---
+SEQ: GCTGGCG
+SEQ_NAME: ID00000008
+SEQ_LEN: 7
+---
+SEQ: GCTGGCG
+SEQ_NAME: ID00000009
+SEQ_LEN: 7
+---
+SEQ: GCTGGCG
+SEQ_NAME: ID00000010
+SEQ_LEN: 7
+---
+SEQ: GCTGGCG
+SEQ_NAME: ID00000011
+SEQ_LEN: 7
+---
+SEQ: GCTGGCG
+SEQ_NAME: ID00000012
+SEQ_LEN: 7
+---
+SEQ: GCTGGCG
+SEQ_NAME: ID00000013
+SEQ_LEN: 7
+---
+SEQ: GCTGGCG
+SEQ_NAME: ID00000014
+SEQ_LEN: 7
+---
+SEQ: GCTGGCG
+SEQ_NAME: ID00000015
+SEQ_LEN: 7
+---
+SEQ: GCTGGCG
+SEQ_NAME: ID00000016
+SEQ_LEN: 7
+---
+SEQ: GCT-GCG
+SEQ_NAME: ID00000017
+SEQ_LEN: 7
+---
+SEQ: -AGGGCG
+SEQ_NAME: ID00000018
+SEQ_LEN: 7
+---
+SEQ: -CTGGCG
+SEQ_NAME: ID00000019
+SEQ_LEN: 7
+---

diff --git a/bp_test/test/test_slice_align b/bp_test/test/test_slice_align
index f9a7422feb117877beecac37187e8da5280f2678..7c97fb280a4c34777d4ccc57d96b8f443fb4e70e 100755 (executable)
--- a/bp_test/test/test_slice_align
+++ b/bp_test/test/test_slice_align
@@ -10,6 +10,10 @@ run "$bp -I $in.1 -f TGGCGGCATG -r GCGAACGGGT -m 0 -i 0 -d 0 -O $tmp"
 assert_no_diff $tmp $out.2
 clean
 
+run "$bp -I $in.1 -F CATGCCGCCA -r GCGAACGGGT -m 0 -i 0 -d 0 -O $tmp"
+assert_no_diff $tmp $out.2
+clean
+
 run "$bp -I $in.1 -f TGGCGGCATG -R ACCCGTTCGC -m 0 -i 0 -d 0 -O $tmp"
 assert_no_diff $tmp $out.2
 clean
@@ -30,3 +34,6 @@ run "$bp -I $in.1 -f ATACGCTGCGGAGGCTA -r TTGCTACCAGGCGTCGAGCGGCGGACGGG -t $in.2
 assert_no_diff $tmp $out.3
 clean
 
+run "$bp -I $in.1 -b 5 -e 10 -t $in.2 -O $tmp"
+assert_no_diff $tmp $out.4
+clean