From: Don Armstrong <don@donarmstrong.com>
Date: Thu, 6 Aug 2015 20:28:12 +0000 (-0700)
Subject: fix bam/sam and fastq/fastq.gz mixup in presentation
X-Git-Url: https://git.donarmstrong.com/?p=using_make_for_science.git;a=commitdiff_plain;h=18243c36fa98d8dccb0e7a496b842c66edd72b59

fix bam/sam and fastq/fastq.gz mixup in presentation
---

diff --git a/using_make_for_science.Rnw b/using_make_for_science.Rnw
index 12ce5e7..4513c11 100644
--- a/using_make_for_science.Rnw
+++ b/using_make_for_science.Rnw
@@ -214,7 +214,7 @@ TARGETS: PREREQUISITES
 
 \begin{frame}[fragile]{Some Functions}
   \begin{itemize}
-  \item \mintinline{make}{$(patsubst %.bam,%.sam,foo.sam bar.sam)} %$
+  \item \mintinline{make}{$(patsubst %.sam,%.bam,foo.sam bar.sam)} %$
       -- returns foo.bam bar.bam.
   \item \mintinline{make}{$(filter-out %.bam,foo.sam bar.bam)} %$
       -- returns foo.sam
@@ -271,7 +271,7 @@ clean:
 
 \begin{frame}[fragile]{Special Targets}
 \begin{minted}[showtabs]{make}
-%.fasta.gz: %.fasta
+%.fasta: %.fasta.gz
 	gzip -dc $< > $@
 
 %.bam: %.sam