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2017-06-27	Don Armstrong	the shell must be specified last	commit \| commitdiff \| tree
2017-06-27	Don Armstrong	slurm interactive jobs need --pty, a shell, and srun	commit \| commitdiff \| tree
2017-06-26	Don Armstrong	silence "which sbatch" checking	commit \| commitdiff \| tree
2017-06-06	Don Armstrong	fix sbatch array options	commit \| commitdiff \| tree
2017-06-06	Don Armstrong	output correct job submitter in interactive debug	commit \| commitdiff \| tree
2017-06-06	Don Armstrong	support precommands before running scripts	commit \| commitdiff \| tree
2017-02-08	Don Armstrong	slurm writes output to the same file by default	commit \| commitdiff \| tree
2017-02-08	Don Armstrong	slurm options are braindead and require =	commit \| commitdiff \| tree
2017-02-08	Don Armstrong	no need to use = for long options	commit \| commitdiff \| tree
2017-02-08	Don Armstrong	fix $? test for batch option	commit \| commitdiff \| tree
2017-02-08	Don Armstrong	fix slurm typo	commit \| commitdiff \| tree
2017-02-08	Don Armstrong	sbatch reads from STDIN by default	commit \| commitdiff \| tree
2017-02-08	Don Armstrong	support slurm	commit \| commitdiff \| tree
2016-07-08	Don Armstrong	only escape if the command contains a space	commit \| commitdiff \| tree
2016-07-08	Don Armstrong	tweak -N sanitation	commit \| commitdiff \| tree
2016-07-08	Don Armstrong	sanitize -N	commit \| commitdiff \| tree
2016-06-27	Don Armstrong	add --join option	commit \| commitdiff \| tree
2016-06-27	Don Armstrong	support account option -A	commit \| commitdiff \| tree
2015-08-06	Don Armstrong	add support for more -l options to qsub	commit \| commitdiff \| tree
2015-08-05	Don Armstrong	automatically specify a job name (no more STDIN)	commit \| commitdiff \| tree
2015-08-05	Don Armstrong	allow for running all array items in one job	commit \| commitdiff \| tree
2015-08-05	Don Armstrong	handle running multiple array options in each job to...	commit \| commitdiff \| tree
2015-08-05	Don Armstrong	fixup array slot limit	commit \| commitdiff \| tree
2015-08-05	Don Armstrong	add array slot limit	commit \| commitdiff \| tree
2015-08-05	Don Armstrong	add missing _ in here doc end	commit \| commitdiff \| tree
2015-08-05	Don Armstrong	remove die because we now support array options	commit \| commitdiff \| tree
2015-08-05	Don Armstrong	add support for array options	commit \| commitdiff \| tree
2015-08-05	Don Armstrong	mem needs to be concatenated, not separated with ,	commit \| commitdiff \| tree
2015-08-05	Don Armstrong	specify the -I option correctly	commit \| commitdiff \| tree
2015-08-05	Don Armstrong	actually return the qsub options	commit \| commitdiff \| tree
2015-08-05	Don Armstrong	avoid using Pod::Simple because biocluster doesn't...	commit \| commitdiff \| tree
2015-08-05	Don Armstrong	make dqsub executable	commit \| commitdiff \| tree
2015-08-05	Don Armstrong	fix two typos in dqsub	commit \| commitdiff \| tree
2015-08-05	Don Armstrong	add start of dqsub	commit \| commitdiff \| tree
2015-07-27	Don Armstrong	tweak the invocation slightly	commit \| commitdiff \| tree
2015-07-27	Don Armstrong	add the option to give a -j to make	commit \| commitdiff \| tree
2015-05-27	Don Armstrong	fix if statement	commit \| commitdiff \| tree
2015-05-27	Don Armstrong	add make	commit \| commitdiff \| tree
2015-05-26	Don Armstrong	only e-mail on abort	commit \| commitdiff \| tree
2015-05-26	Don Armstrong	we can only request 18GB	commit \| commitdiff \| tree
2015-05-26	Don Armstrong	add destination directory	commit \| commitdiff \| tree
2015-05-26	Don Armstrong	stop immediately upon error	commit \| commitdiff \| tree
2015-05-26	Don Armstrong	reserve 32GB of ram	commit \| commitdiff \| tree
2015-05-26	Don Armstrong	send mail when the job ends	commit \| commitdiff \| tree
2015-05-26	Don Armstrong	use - for stdin	commit \| commitdiff \| tree
2015-05-26	Don Armstrong	we want samtools 1.0, not samtools 0.1.8	commit \| commitdiff \| tree
2015-05-26	Don Armstrong	compress fastq	commit \| commitdiff \| tree
2015-05-26	Don Armstrong	load samtools	commit \| commitdiff \| tree
2015-05-26	Don Armstrong	use rsync instead of wget	commit \| commitdiff \| tree
2015-05-26	Don Armstrong	fix wrong SRR variable name	commit \| commitdiff \| tree
2015-05-26	Don Armstrong	quote variables	commit \| commitdiff \| tree
2015-05-26	Don Armstrong	add missing space	commit \| commitdiff \| tree
2015-05-26	Don Armstrong	fix variable names which were wrong	commit \| commitdiff \| tree
2015-05-26	Don Armstrong	add fpkm script	commit \| commitdiff \| tree

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