From 9097cdad18f9e0a2a4e3dd677bccd0e09d1478a4 Mon Sep 17 00:00:00 2001 From: Don Armstrong Date: Thu, 13 Jul 2017 14:16:38 -0700 Subject: [PATCH] add readme for uiuc_igb_scripts --- README.md | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 README.md diff --git a/README.md b/README.md new file mode 100644 index 0000000..874ede1 --- /dev/null +++ b/README.md @@ -0,0 +1,29 @@ +# Don's Cluster Scripts + +This repo contains three tools which you might find useful; but +really, you probably just want it for `dqsub`. + +## dqsub -- qsub or sbatch generator + +Use this script to generate qsub scripts. You can run it like: + +`dqsub -q default --mem 40G --ppn 12 make foo` + +or + +`ls -1 */|dqsub -q budget --mem 5 --ppn 6 --array chdir make` + +See its documentation for more details. + +## fpkm_from_srr + +Quick script to get FPKMs from an SRR. Don't actually use this +anymore. + +## run_make + +Run make with some wrapper options; mainly useful so you can do + +`qsub -v MAKE_OPTS=foo -l ppn:5,mem:40G run_make` + +but this is largely superseded by `dqsub`. -- 2.39.2