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Don Armstrong [Tue, 26 May 2015 21:26:13 +0000 (14:26 -0700)]
only e-mail on abort
Don Armstrong [Tue, 26 May 2015 19:03:04 +0000 (12:03 -0700)]
we can only request 18GB
Don Armstrong [Tue, 26 May 2015 18:25:59 +0000 (11:25 -0700)]
add destination directory
Don Armstrong [Tue, 26 May 2015 18:24:25 +0000 (11:24 -0700)]
stop immediately upon error
Don Armstrong [Tue, 26 May 2015 18:11:32 +0000 (11:11 -0700)]
reserve 32GB of ram
Don Armstrong [Tue, 26 May 2015 17:30:22 +0000 (10:30 -0700)]
send mail when the job ends
Don Armstrong [Tue, 26 May 2015 17:29:13 +0000 (10:29 -0700)]
use - for stdin
Don Armstrong [Tue, 26 May 2015 17:09:21 +0000 (10:09 -0700)]
we want samtools 1.0, not samtools 0.1.8
Don Armstrong [Tue, 26 May 2015 16:48:01 +0000 (09:48 -0700)]
compress fastq
Don Armstrong [Tue, 26 May 2015 16:46:53 +0000 (09:46 -0700)]
load samtools
Don Armstrong [Tue, 26 May 2015 16:25:08 +0000 (09:25 -0700)]
use rsync instead of wget
Don Armstrong [Tue, 26 May 2015 16:21:57 +0000 (09:21 -0700)]
fix wrong SRR variable name
Don Armstrong [Tue, 26 May 2015 16:21:25 +0000 (09:21 -0700)]
quote variables
Don Armstrong [Tue, 26 May 2015 16:20:23 +0000 (09:20 -0700)]
add missing space
Don Armstrong [Tue, 26 May 2015 16:19:36 +0000 (09:19 -0700)]
fix variable names which were wrong
Don Armstrong [Tue, 26 May 2015 16:16:16 +0000 (09:16 -0700)]
add fpkm script
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