From: Don Armstrong <don@donarmstrong.com>
Date: Tue, 26 May 2015 21:26:13 +0000 (-0700)
Subject: only e-mail on abort
X-Git-Url: https://git.donarmstrong.com/?p=uiuc_igb_scripts.git;a=commitdiff_plain;h=eb07589762bb9084d80e8742cd74a648733ecb58

only e-mail on abort
---

diff --git a/fpkm_from_srr b/fpkm_from_srr
index 4b2f90b..8e207f3 100755
--- a/fpkm_from_srr
+++ b/fpkm_from_srr
@@ -28,7 +28,7 @@ function set_up_the_run {
     (cd "$FROM_SRR_SRR";
      rsync -avP rsync://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/${FROM_SRR_SRR:0:6}/${FROM_SRR_SRR}/${FROM_SRR_SRR}.sra .;
     );
-    qsub -q budget -v FROM_SRR_SRR,FROM_SRR_GTF,FROM_SRR_REF -S /bin/bash -d $(pwd) -m ae -M donarm@illinois.edu -l "nodes=1:ppn=${CORES},mem=${MAX_MEM}" "$0"    
+    qsub -q budget -v FROM_SRR_SRR,FROM_SRR_GTF,FROM_SRR_REF -S /bin/bash -d $(pwd) -m a -M donarm@illinois.edu -l "nodes=1:ppn=${CORES},mem=${MAX_MEM}" "$0"    
 };