X-Git-Url: https://git.donarmstrong.com/?p=uiuc_igb_scripts.git;a=blobdiff_plain;f=fpkm_from_srr;h=8e207f3a2af315a8a86a937776c1c5db806b418d;hp=4b2f90becfd7b01bc5a5f87f91916c1acbb5ae73;hb=59314b681ad15e7605871d89853625a69e2d4bf0;hpb=b358c19d627cab411c7b29f415f585adbc456f1b

diff --git a/fpkm_from_srr b/fpkm_from_srr
index 4b2f90b..8e207f3 100755
--- a/fpkm_from_srr
+++ b/fpkm_from_srr
@@ -28,7 +28,7 @@ function set_up_the_run {
     (cd "$FROM_SRR_SRR";
      rsync -avP rsync://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/${FROM_SRR_SRR:0:6}/${FROM_SRR_SRR}/${FROM_SRR_SRR}.sra .;
     );
-    qsub -q budget -v FROM_SRR_SRR,FROM_SRR_GTF,FROM_SRR_REF -S /bin/bash -d $(pwd) -m ae -M donarm@illinois.edu -l "nodes=1:ppn=${CORES},mem=${MAX_MEM}" "$0"    
+    qsub -q budget -v FROM_SRR_SRR,FROM_SRR_GTF,FROM_SRR_REF -S /bin/bash -d $(pwd) -m a -M donarm@illinois.edu -l "nodes=1:ppn=${CORES},mem=${MAX_MEM}" "$0"    
 };