From e2a3ec4a7acf3ea9ac13e88bf4badd50132c81ce Mon Sep 17 00:00:00 2001
From: Heng Li <lh3@live.co.uk>
Date: Wed, 15 Apr 2009 13:05:33 +0000
Subject: [PATCH] prepare for release 0.1.3

---
 ChangeLog  | 33 +++++++++++++++++++++++++++++++++
 NEWS       |  4 ++--
 samtools.1 |  6 ++----
 3 files changed, 37 insertions(+), 6 deletions(-)

diff --git a/ChangeLog b/ChangeLog
index 682af5c..e2958e7 100644
--- a/ChangeLog
+++ b/ChangeLog
@@ -1,3 +1,36 @@
+------------------------------------------------------------------------
+r221 | lh3lh3 | 2009-04-15 13:32:14 +0100 (Wed, 15 Apr 2009) | 2 lines
+Changed paths:
+   A /trunk/samtools/misc/blast2sam.pl
+
+convert NCBI-BLASTN to SAM
+
+------------------------------------------------------------------------
+r220 | lh3lh3 | 2009-04-15 13:18:19 +0100 (Wed, 15 Apr 2009) | 3 lines
+Changed paths:
+   M /trunk/samtools/bam_lpileup.c
+   M /trunk/samtools/bamtk.c
+
+ * samtools-0.1.2-27
+ * fixed a small memory leak in tview
+
+------------------------------------------------------------------------
+r219 | lh3lh3 | 2009-04-15 13:00:08 +0100 (Wed, 15 Apr 2009) | 3 lines
+Changed paths:
+   M /trunk/samtools/bam_rmdup.c
+   M /trunk/samtools/bamtk.c
+
+ * samtools-0.1.2-26
+ * fixed a bug in rmdup when there are unmapped reads
+
+------------------------------------------------------------------------
+r218 | lh3lh3 | 2009-04-14 22:28:58 +0100 (Tue, 14 Apr 2009) | 2 lines
+Changed paths:
+   M /trunk/samtools/ChangeLog
+   M /trunk/samtools/NEWS
+
+proposed NEWS for the new release (have not yet)
+
 ------------------------------------------------------------------------
 r216 | lh3lh3 | 2009-04-14 22:10:46 +0100 (Tue, 14 Apr 2009) | 4 lines
 Changed paths:
diff --git a/NEWS b/NEWS
index b8b8bc7..1956b6c 100644
--- a/NEWS
+++ b/NEWS
@@ -1,4 +1,4 @@
-Beta Release 0.1.3 (XX April, 2009)
+Beta Release 0.1.3 (15 April, 2009)
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
 Notable changes in SAMtools:
@@ -37,7 +37,7 @@ Changes in other utilities:
 
  * Various converters: improved functionality in general.
 
-(0.1.3: XX April 2009, rXXX)
+(0.1.3: 15 April 2009, rXXX)
 
 
 
diff --git a/samtools.1 b/samtools.1
index 9f6381a..acd27bc 100644
--- a/samtools.1
+++ b/samtools.1
@@ -1,4 +1,4 @@
-.TH samtools 1 "28 January 2009" "samtools-0.1.2" "Bioinformatics tools"
+.TH samtools 1 "15 April 2009" "samtools-0.1.3" "Bioinformatics tools"
 .SH NAME
 .PP
 samtools - Utilities for the Sequence Alignment/Map (SAM) format
@@ -319,13 +319,11 @@ _
 .SH LIMITATIONS
 .PP
 .IP o 2
-In general, more testing is needed to ensure there is no severe bug.
-.IP o 2
 Reference sequence names and lengths are not acquired from the BAM/SAM header.
 .IP o 2
 CIGAR operation P is not properly handled at the moment.
 .IP o 2
-There is a small memory leak in the viewer.
+The text viewer mysteriously crashes in a very rare case.
 
 .SH AUTHOR
 .PP
-- 
2.39.2