From c49928a6aaed32f56aa8da587fb9f38889c3b28c Mon Sep 17 00:00:00 2001 From: Petr Danecek Date: Mon, 3 Dec 2012 10:00:44 +0000 Subject: [PATCH] bam_plcmd.c: more descriptive -b usage help message --- bam_plcmd.c | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bam_plcmd.c b/bam_plcmd.c index a51e773..852e9ee 100644 --- a/bam_plcmd.c +++ b/bam_plcmd.c @@ -523,7 +523,7 @@ int bam_mpileup(int argc, char *argv[]) fprintf(stderr, " -6 assume the quality is in the Illumina-1.3+ encoding\n"); fprintf(stderr, " -A count anomalous read pairs\n"); fprintf(stderr, " -B disable BAQ computation\n"); - fprintf(stderr, " -b FILE list of input BAM files [null]\n"); + fprintf(stderr, " -b FILE list of input BAM filenames, one per line [null]\n"); fprintf(stderr, " -C INT parameter for adjusting mapQ; 0 to disable [0]\n"); fprintf(stderr, " -d INT max per-BAM depth to avoid excessive memory usage [%d]\n", mplp.max_depth); fprintf(stderr, " -E recalculate extended BAQ on the fly thus ignoring existing BQs\n"); -- 2.39.2