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]> git.donarmstrong.com Git - samtools.git/history - padding.c

2012-06-19	peterjc	SAM/BAM input to 'samtools depad' not linked to FASTA...	blob \| commitdiff \| raw
2012-06-19	peterjc	Wording of error messages	blob \| commitdiff \| raw \| diff to current
2012-06-19	peterjc	Check embedded reference against FASTA if given in...	blob \| commitdiff \| raw \| diff to current
2012-06-19	peterjc	Use FASTA file when no embedded reference in 'samtools...	blob \| commitdiff \| raw \| diff to current
2012-06-19	peterjc	Load FAI in 'samtools depad' (not used yet)	blob \| commitdiff \| raw \| diff to current
2012-06-19	peterjc	Add reference FASTA file to 'samtools depad' command...	blob \| commitdiff \| raw \| diff to current
2012-06-19	peterjc	Support SAM or BAM input/output in 'samtools depad...	blob \| commitdiff \| raw \| diff to current
2012-06-19	peterjc	Minimal 'samtools depad' command line parsing (-? only...	blob \| commitdiff \| raw \| diff to current
2012-06-19	peterjc	Adding a usage function to 'samtools depad' following...	blob \| commitdiff \| raw \| diff to current
2012-06-19	peterjc	Add a tiny bit of help text to 'samtools depad' command.	blob \| commitdiff \| raw \| diff to current
2012-06-19	peterjc	Revert one of my earlier changes - Heng was right,...	blob \| commitdiff \| raw \| diff to current
2012-06-19	peterjc	Fix buffer overflow in 'samtools depad' with CIGAR...	blob \| commitdiff \| raw \| diff to current
2012-06-19	peterjc	Fixed the next silly error on that line.	blob \| commitdiff \| raw \| diff to current
2012-06-19	peterjc	Fix silly typo	blob \| commitdiff \| raw \| diff to current
2012-06-19	peterjc	More elegant solution to avoid superfluous leading...	blob \| commitdiff \| raw \| diff to current
2012-06-19	peterjc	Refine logic for removing superfluous P ops (still...	blob \| commitdiff \| raw \| diff to current
2012-04-04	Petr Danecek	Merge remote branch 'main/master'	blob \| commitdiff \| raw \| diff to current
2012-03-29	Heng Li	Merge branch 'master' of github.com:samtools/samtools...	blob \| commitdiff \| raw \| diff to current
2012-03-29	samtools	Merge pull request #2 from peterjc/depad	blob \| commitdiff \| raw \| diff to current
2012-03-26	peterjc	Check reference length in BAM header against embedded...	blob \| commitdiff \| raw \| diff to current
2012-03-26	peterjc	Cope with trailing CIGAR H (or S and H) in 'samtools...	blob \| commitdiff \| raw \| diff to current
2012-03-26	peterjc	Cope with leading CIGAR H (or H and S) in 'samtools...	blob \| commitdiff \| raw \| diff to current
2012-03-26	peterjc	Tolerate CIGAR H operators in 'samtools depad'	blob \| commitdiff \| raw \| diff to current
2012-03-26	peterjc	Include leading CIGAR P operators in 'samtools depad'	blob \| commitdiff \| raw \| diff to current
2012-03-26	peterjc	Record actual sequence in unpad_seq (fixes apparently...	blob \| commitdiff \| raw \| diff to current
2012-03-23	peterjc	Correct my error message; assed some comments	blob \| commitdiff \| raw \| diff to current
2012-03-23	peterjc	Add TODO note about reference lengths	blob \| commitdiff \| raw \| diff to current
2012-03-23	peterjc	Cope with CIGAR D or P to mark gaps in an embedded...	blob \| commitdiff \| raw \| diff to current
2012-03-22	peterjc	Check current reference sequence matches RNAME in samto...	blob \| commitdiff \| raw \| diff to current
2012-03-22	peterjc	Support CIGAR X/= in depad	blob \| commitdiff \| raw \| diff to current
2012-03-22	peterjc	Helpful error message on bad CIGAR in unpad_seq	blob \| commitdiff \| raw \| diff to current
2012-02-08	Heng Li	changes from git	blob \| commitdiff \| raw \| diff to current
2011-09-23	Heng Li	converted padded SAM to unpadded SAM	blob \| commitdiff \| raw \| diff to current

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