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Merge remote branch 'remotes/master/master' into fb-annots
[samtools.git] / bcftools / call1.c
2013-03-12 Petr DanecekMerge remote branch 'remotes/master/master' into fb... blob | commitdiff | raw
2013-03-12 Petr Danecekbackup commit blob | commitdiff | raw | diff to current
2013-03-12 Petr DanecekMerge branch 'master' of github.com:samtools/samtools blob | commitdiff | raw | diff to current
2013-03-12 Petr Danecekbcftools view: Exit with an error if the -l file cannot... blob | commitdiff | raw | diff to current
2013-03-07 Petr Danecekbackup commit blob | commitdiff | raw | diff to current
2013-03-01 Petr Danecekbcftools view: always output the header, even when... blob | commitdiff | raw | diff to current
2013-01-28 Petr DanecekMerge remote branch 'remotes/pierre/master' into develop blob | commitdiff | raw | diff to current
2013-01-07 Heng Lidump log-likelihood blob | commitdiff | raw | diff to current
2012-09-12 Petr DanecekMerge remote branch 'remotes/pd3/master' blob | commitdiff | raw | diff to current
2012-07-05 Petr DanecekVCF annotations with and without -m and more robust... blob | commitdiff | raw | diff to current
2012-07-03 Petr DanecekBug fixes blob | commitdiff | raw | diff to current
2012-07-02 Petr DanecekAlternative model for multiallelic and rare-variant... blob | commitdiff | raw | diff to current
2012-04-12 Petr DanecekOn behalf of Bradford Powell: fixed typo in VCF header... blob | commitdiff | raw | diff to current
2012-02-16 Heng Libugfix: wrong SP; missing DV in the VCF header blob | commitdiff | raw | diff to current
2011-08-17 Heng Li * bugfix in index: large memory when a read pos is 1 blob | commitdiff | raw | diff to current
2011-07-13 Heng Lisupport trio indels blob | commitdiff | raw | diff to current
2011-07-07 Heng Lifor WIN32 compatibility blob | commitdiff | raw | diff to current
2011-07-07 Heng LiRelease samtools-0.1.17 blob | commitdiff | raw | diff to current
2011-06-03 Heng Li * 0.1.16-dev (r969:252) blob | commitdiff | raw | diff to current
2011-04-17 Heng Li * fixed a bug in bedidx: input BED not sorted blob | commitdiff | raw | diff to current
2011-04-15 Heng Li * Added Brent's method for frequency estimate blob | commitdiff | raw | diff to current
2011-04-10 Heng LiRelease samtools-0.1.15 (r949:203) blob | commitdiff | raw | diff to current
2011-04-08 Heng Li * added bam_verbose global variable blob | commitdiff | raw | diff to current
2011-03-30 Heng Li * added BED support to samtools view and mpileup and... blob | commitdiff | raw | diff to current
2011-03-22 Heng LiRelease samtools-0.1.14 (r933:170) blob | commitdiff | raw | diff to current
2011-03-18 Heng Li * allow to change the compression level in BAM output blob | commitdiff | raw | diff to current
2011-03-08 Heng Liadded the haploid mode blob | commitdiff | raw | diff to current
2011-02-11 Heng Lifinished VCF->BCF conversion blob | commitdiff | raw | diff to current
2011-02-02 Heng Lifixed a typo in the VCF header blob | commitdiff | raw | diff to current
2011-01-06 Heng Li * samtools-0.1.12-10 (r896) blob | commitdiff | raw | diff to current
2011-01-04 Petr DanecekFixed a typo in read_samples blob | commitdiff | raw | diff to current
2010-12-21 Heng Li * samtools-0.1.12-9 (r891) blob | commitdiff | raw | diff to current
2010-12-14 Petr DanecekFixed the VCF header to pass validation blob | commitdiff | raw | diff to current
2010-12-12 Heng Licompute max SP and max GQ from sample genotypes blob | commitdiff | raw | diff to current
2010-12-10 Heng Li * fixed a minor issue in printing VCFs blob | commitdiff | raw | diff to current
2010-12-10 Heng LiMake sure that the GT genotype field is the first blob | commitdiff | raw | diff to current
2010-12-05 Heng LiIn ksprintf(), change "%lf" and "%lg" to "%f" and ... blob | commitdiff | raw | diff to current
2010-12-03 Heng Li * remove "-f". Instead always compute consensus quality blob | commitdiff | raw | diff to current
2010-12-02 Heng Lia possible fix to DP4=0,0,0,0; have not tested, but... blob | commitdiff | raw | diff to current
2010-11-20 Heng Li * samtools-0.1.10-9 (r844) blob | commitdiff | raw | diff to current
2010-11-16 Heng Libcftools: allow to skip indels blob | commitdiff | raw | diff to current
2010-11-16 Heng Li * samtools-0.1.9-17 (r824) blob | commitdiff | raw | diff to current
2010-11-10 Heng Libcftools: compute equal-tail (Bayesian) credible interval blob | commitdiff | raw | diff to current
2010-10-14 Heng Liimprove the LD statistics blob | commitdiff | raw | diff to current
2010-10-13 Heng Li * a minor fix to the -L option blob | commitdiff | raw | diff to current
2010-10-12 Heng Li * vcfutils.pl: fixed a typo in help message blob | commitdiff | raw | diff to current
2010-10-03 Heng Li * samtools-0.1.8-18 (r763) blob | commitdiff | raw | diff to current
2010-10-03 Heng Li * vcfutils.pl qstats: calculate marginal ts/tv blob | commitdiff | raw | diff to current
2010-09-17 Heng Li * put n_smpl to "bcf1_t" to simplify API a little blob | commitdiff | raw | diff to current
2010-09-17 Heng Lifixed a bug in indexing blob | commitdiff | raw | diff to current
2010-09-15 Heng Li * convert BCF to QCALL input blob | commitdiff | raw | diff to current
2010-09-08 Heng Li * samtools-0.1.8-13 (r715) blob | commitdiff | raw | diff to current
2010-09-03 Heng Liquite a lot changes to the contrast caller, but I still... blob | commitdiff | raw | diff to current
2010-09-03 Heng Li * changed 3.434 to 4.343 (typo!) blob | commitdiff | raw | diff to current
2010-09-02 Heng LiSNP calling from the GL field blob | commitdiff | raw | diff to current
2010-09-01 Heng LiWrite the correct ALT and PL in the SNP calling mode. blob | commitdiff | raw | diff to current
2010-08-31 Heng Lipreliminary contrast variant caller blob | commitdiff | raw | diff to current
2010-08-31 Heng Liz' and z'' can be calculated blob | commitdiff | raw | diff to current
2010-08-31 Heng Li * rename vcfout.c as call1.c blob | commitdiff | raw | diff to current
Mirror of samtools with my branches