From: Heng Li <lh3@live.co.uk>
Date: Tue, 28 Apr 2009 12:53:23 +0000 (+0000)
Subject:  * samtools-0.1.3-8 (r251)
X-Git-Url: https://git.donarmstrong.com/?p=samtools.git;a=commitdiff_plain;h=e05bad216a0100124389a7360832dff1d69c6155

 * samtools-0.1.3-8 (r251)
 * fixed a bug when there are reads without coordinates
---

diff --git a/bam_pileup.c b/bam_pileup.c
index 02bdfd0..616767a 100644
--- a/bam_pileup.c
+++ b/bam_pileup.c
@@ -161,6 +161,7 @@ void bam_plbuf_destroy(bam_plbuf_t *buf)
 int bam_plbuf_push(const bam1_t *b, bam_plbuf_t *buf)
 {
 	if (b) { // fill buffer
+		if (b->core.tid < 0) return 0;
 		if (b->core.flag & buf->flag_mask) return 0;
 		bam_copy1(&buf->tail->b, b);
 		buf->tail->beg = b->core.pos; buf->tail->end = bam_calend(&b->core, bam1_cigar(b));
diff --git a/bamtk.c b/bamtk.c
index ab39e9d..b0a21dd 100644
--- a/bamtk.c
+++ b/bamtk.c
@@ -3,7 +3,7 @@
 #include "bam.h"
 
 #ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.1.3-7 (r246)"
+#define PACKAGE_VERSION "0.1.3-8 (r251)"
 #endif
 
 int bam_taf2baf(int argc, char *argv[]);