From: Heng Li <lh3@live.co.uk>
Date: Fri, 23 Jul 2010 17:43:31 +0000 (+0000)
Subject: added the format column
X-Git-Url: https://git.donarmstrong.com/?p=samtools.git;a=commitdiff_plain;h=dc7a0039e9336bac51a4f721db0b8f155b064fa2

added the format column
---

diff --git a/bam_plcmd.c b/bam_plcmd.c
index 82fcafc..3436633 100644
--- a/bam_plcmd.c
+++ b/bam_plcmd.c
@@ -602,6 +602,7 @@ static int mpileup(mplp_conf_t *conf, int n, char **fn)
 			printf("DP=%d;MQ=%d", depth, rms_q);
 			if (fpost >= 0. && fpost <= 1.) printf(";AF=%.3lg", 1. - fpost);
 			if (f >= 0. && f <= 1.) printf(";AFEM=%.3lg", 1. - f);
+			printf("\tGT:GQ:DP");
 			if (fpost >= 0. && fpost <= 1.) {
 				for (i = 0; i < n; ++i) {
 					int x = mc_call_gt(ma, fpost, i);