From: On behalf of John Marshall <lh3@sanger.ac.uk>
Date: Mon, 30 Nov 2009 15:53:02 +0000 (+0000)
Subject: Put libraries at the end, so they can resolve references from libbam.a
X-Git-Url: https://git.donarmstrong.com/?p=samtools.git;a=commitdiff_plain;h=4234ca876913410a3db043171d2fecb6f871bae2

Put libraries at the end, so they can resolve references from libbam.a
as well, even with old-fashioned linkers.

Also use libbam.a explicitly rather than "-L. -lbam" to ensure that we get
the freshly built library, not some other libbam.a lying around the system.
---

diff --git a/Makefile b/Makefile
index afd3b16..2a7ab71 100644
--- a/Makefile
+++ b/Makefile
@@ -36,7 +36,7 @@ libbam.a:$(LOBJS)
 		$(AR) -cru $@ $(LOBJS)
 
 samtools:lib $(AOBJS)
-		$(CC) $(CFLAGS) -o $@ $(AOBJS) -lm $(LIBPATH) $(LIBCURSES) -lz -L. -lbam
+		$(CC) $(CFLAGS) -o $@ $(AOBJS) libbam.a -lm $(LIBPATH) $(LIBCURSES) -lz
 
 razip:razip.o razf.o knetfile.o
 		$(CC) $(CFLAGS) -o $@ razf.o razip.o knetfile.o -lz