From: Petr Danecek <pd3@sanger.ac.uk>
Date: Wed, 28 Mar 2012 09:04:40 +0000 (+0800)
Subject: Added rule for bamcheck creation
X-Git-Url: https://git.donarmstrong.com/?p=samtools.git;a=commitdiff_plain;h=3248eee0ef92440089209efc446217bc497481e2

Added rule for bamcheck creation
---

diff --git a/misc/Makefile b/misc/Makefile
index c8b89e6..9434399 100644
--- a/misc/Makefile
+++ b/misc/Makefile
@@ -4,7 +4,7 @@ CFLAGS=		-g -Wall -O2 #-m64 #-arch ppc
 CXXFLAGS=	$(CFLAGS)
 DFLAGS=		-D_FILE_OFFSET_BITS=64
 OBJS=		
-PROG=		md5sum-lite md5fa maq2sam-short maq2sam-long ace2sam wgsim seqtk
+PROG=		md5sum-lite md5fa maq2sam-short maq2sam-long ace2sam wgsim seqtk bamcheck
 INCLUDES=	-I..
 SUBDIRS=	.
 
@@ -27,6 +27,9 @@ lib-recur all-recur clean-recur cleanlocal-recur install-recur:
 
 lib:
 
+bamcheck:bamcheck.o
+		$(CC) $(CFLAGS) -o $@ bamcheck.o -lm -lz -L.. -lbam
+
 ace2sam:ace2sam.o
 		$(CC) $(CFLAGS) -o $@ ace2sam.o -lz