From: Heng Li <lh3@live.co.uk>
Date: Wed, 8 Dec 2010 03:40:35 +0000 (+0000)
Subject: a spelling error..
X-Git-Url: https://git.donarmstrong.com/?p=samtools.git;a=commitdiff_plain;h=1bb8e1e608757f82c4c5e89fbe0912a7883e9890

a spelling error..
---

diff --git a/bam_plcmd.c b/bam_plcmd.c
index 29fbb9c..b562b94 100644
--- a/bam_plcmd.c
+++ b/bam_plcmd.c
@@ -904,7 +904,7 @@ int bam_mpileup(int argc, char *argv[])
 		fprintf(stderr, "         -o INT      Phred-scaled gap open sequencing error probability [%d]\n", mplp.openQ);
 		fprintf(stderr, "         -e INT      Phred-scaled gap extension seq error probability [%d]\n", mplp.extQ);
 		fprintf(stderr, "         -h INT      coefficient for homopolyer errors [%d]\n", mplp.tandemQ);
-		fprintf(stderr, "         -A          use anomolous read pairs in SNP/INDEL calling\n");
+		fprintf(stderr, "         -A          use anomalous read pairs in SNP/INDEL calling\n");
 		fprintf(stderr, "         -g          generate BCF output\n");
 		fprintf(stderr, "         -u          do not compress BCF output\n");
 		fprintf(stderr, "         -B          disable BAQ computation\n");