X-Git-Url: https://git.donarmstrong.com/?p=samtools.git;a=blobdiff_plain;f=bam_lpileup.c;h=d4dd63b99b85dd4c5811758153a56757c908a52c;hp=1562170e9159e8b53f2d65d7c87e4a59e8acecac;hb=307c147168f7154e3755712797078c513e0b242a;hpb=bd524958de35283de49cae7e7851da4c9e5eb6de

diff --git a/bam_lpileup.c b/bam_lpileup.c
index 1562170..d4dd63b 100644
--- a/bam_lpileup.c
+++ b/bam_lpileup.c
@@ -1,5 +1,6 @@
 #include <stdlib.h>
 #include <stdio.h>
+#include <assert.h>
 #include "bam.h"
 #include "ksort.h"
 
@@ -195,19 +196,3 @@ int bam_lplbuf_push(const bam1_t *b, bam_lplbuf_t *tv)
 {
 	return bam_plbuf_push(b, tv->plbuf);
 }
-
-int bam_lpileup_file(bamFile fp, int mask, bam_pileup_f func, void *func_data)
-{
-	bam_lplbuf_t *buf;
-	int ret;
-	bam1_t *b;
-	b = (bam1_t*)calloc(1, sizeof(bam1_t));
-	buf = bam_lplbuf_init(func, func_data);
-	bam_plbuf_set_mask(buf->plbuf, mask);
-	while ((ret = bam_read1(fp, b)) >= 0)
-		bam_lplbuf_push(b, buf);
-	bam_lplbuf_push(0, buf);
-	bam_lplbuf_destroy(buf);
-	free(b->data); free(b);
-	return 0;
-}