X-Git-Url: https://git.donarmstrong.com/?p=samtools.git;a=blobdiff_plain;f=bam2bcf.c;h=a51a406f249c05834b0d8e20f49403d5ed29a3b6;hp=f69684dc8c31acce2636b17a8da95374ecb3231a;hb=307c147168f7154e3755712797078c513e0b242a;hpb=74e6aebb5c07d14cdccc5f8abb40fd4a00b2be86

diff --git a/bam2bcf.c b/bam2bcf.c
index f69684d..a51a406 100644
--- a/bam2bcf.c
+++ b/bam2bcf.c
@@ -87,9 +87,9 @@ int bcf_call_glfgen(int _n, const bam_pileup1_t *pl, int ref_base, bcf_callaux_t
 		if (min_dist > p->qpos) min_dist = p->qpos;
 		if (min_dist > CAP_DIST) min_dist = CAP_DIST;
 		r->anno[1<<2|is_diff<<1|0] += baseQ;
-		r->anno[1<<2|is_diff<<1|1] += baseQ * baseQ;
+		r->anno[1<<2|is_diff<<1|1] += baseQ * baseQ;	// FIXME: signed int is not enough for thousands of samples
 		r->anno[2<<2|is_diff<<1|0] += mapQ;
-		r->anno[2<<2|is_diff<<1|1] += mapQ * mapQ;
+		r->anno[2<<2|is_diff<<1|1] += mapQ * mapQ;		// FIXME: signed int is not enough for thousands of samples
 		r->anno[3<<2|is_diff<<1|0] += min_dist;
 		r->anno[3<<2|is_diff<<1|1] += min_dist * min_dist;
 	}