Release samtools-0.1.9 (r783)

[samtools.git] / samtools.1

diff --git a/samtools.1 b/samtools.1
index 77b5a22f62b6233f513d5695ad98a61d5474cdff..cc421d4bc34fd53efa123b4630fcbccb4ca58708 100644 (file)
--- a/samtools.1
+++ b/samtools.1
@@ -606,6 +606,9 @@ consider to apply
 .B -C50
 to
 .BR mpileup .
+SNP calling in this way also works for single sample and has the
+advantage of enabling more powerful filtering. The drawback is the lack
+of short indel calling, which may be implemented in future.
 
 .IP o 2
 Derive the allele frequency spectrum (AFS) on a list of sites from multiple individuals: