Fix missing declaration for getopt on Mac OS X

[samtools.git] / sam_header.h

diff --git a/sam_header.h b/sam_header.h
index 4f633ed7625c9591cd664387a882e88b0622b490..e5c754f3649ce6a13e6f5cb3ca93275d13bb67fe 100644 (file)
--- a/sam_header.h
+++ b/sam_header.h
@@ -1,48 +1,24 @@
 #ifndef __SAM_HEADER_H__
 #define __SAM_HEADER_H__
 
-#include "khash.h"
-KHASH_MAP_INIT_STR(str,const char *)
-
-// HeaderDict is a list_t of header lines. Each HeaderLine holds a list of tags.
-struct _list_t
-{
-    struct _list_t *next;
-    void *data;
-};
-typedef struct _list_t list_t;
-typedef list_t HeaderDict;
-
-typedef struct
-{
-    char key[2];
-    char *value;
-}
-HeaderTag;
-
-typedef struct
-{
-    char type[2];
-    list_t *tags;
-}
-HeaderLine;
-
-
-void debug(const char *format, ...);
-void error(const char *format, ...);
+#ifdef __cplusplus
+extern "C" {
+#endif
 
-HeaderDict *sam_header_parse(const char *headerText);
-void sam_header_free(HeaderDict *header);
-char *sam_header_write(const HeaderDict *headerDict);   // returns a newly allocated string
+       void *sam_header_parse2(const char *headerText);
+       void *sam_header_merge(int n, const void **dicts);
+       void sam_header_free(void *header);
+       char *sam_header_write(const void *headerDict);   // returns a newly allocated string
 
-khash_t(str) *sam_header_lookup_table(const HeaderDict *dict, char type[2], char key_tag[2], char value_tag[2]);
+       char **sam_header2list(const void *_dict, char type[2], char key_tag[2], int *_n);
 
-list_t *list_append(list_t *root, void *data);
-void list_free(list_t *root);
+       void *sam_header2tbl(const void *dict, char type[2], char key_tag[2], char value_tag[2]);
+       const char *sam_tbl_get(void *h, const char *key);
+       int sam_tbl_size(void *h);
+       void sam_tbl_destroy(void *h);
 
-//HeaderDict *sam_header_merge(int n, const HeaderDict **dicts);  // if n=1, the func clones the dictionary
-//char *sam_header_get(const HeaderDict *d, char type[2], int i, char tag[2]);  
-//int sam_header_ins(HeaderDict *d, char tp[2], int i, char tg[2], const char *s);  
-//int sam_header_del(HeaderDict *d, char type[2], int i, char tag[2]);  
+#ifdef __cplusplus
+}
+#endif
 
 #endif