* samtools-0.1.4-2 (r316)

[samtools.git] / sam.c

diff --git a/sam.c b/sam.c
index 8411d81f0af8b19e04cc1ffc77e1f741efd6987b..48a4b34ef10ee92280d5843a3ccd81593cd34540 100644 (file)
--- a/sam.c
+++ b/sam.c
@@ -43,7 +43,7 @@ samfile_t *samopen(const char *fn, const char *mode, const void *aux)
                                        fp->header = sam_header_read2((const char*)aux);
                                }
                                if (fp->header->n_targets == 0)
-                                       fprintf(stderr, "[samopen] empty header.\n");
+                                       fprintf(stderr, "[samopen] no @SQ lines in the header.\n");
                        } else fprintf(stderr, "[samopen] SAM header is present: %d sequences.\n", fp->header->n_targets);
                }
        } else if (mode[0] == 'w') { // write