Compile cleanly from top-level Makefile. Check for out of bounds tids.

[samtools.git] / misc / Makefile

diff --git a/misc/Makefile b/misc/Makefile
index 9434399bdc6a08245a013d19c8a598b9151ce644..64aa9df7c1b6e86fafa14ba7b3040b163175b16f 100644 (file)
--- a/misc/Makefile
+++ b/misc/Makefile
@@ -30,6 +30,9 @@ lib:
 bamcheck:bamcheck.o
                $(CC) $(CFLAGS) -o $@ bamcheck.o -lm -lz -L.. -lbam
 
+bamcheck.o:bamcheck.c ../faidx.h ../khash.h ../sam.h ../razf.h
+               $(CC) $(CFLAGS) -c -I.. -o $@ bamcheck.c
+
 ace2sam:ace2sam.o
                $(CC) $(CFLAGS) -o $@ ace2sam.o -lz