fixed a minor bug in idxstats

[samtools.git] / misc / Makefile

diff --git a/misc/Makefile b/misc/Makefile
index 2c400f806392fce11f9133f41323ed5396ab179f..2f1578b3f720c65d8b2d3bc9bb6086768e819cac 100644 (file)
--- a/misc/Makefile
+++ b/misc/Makefile
@@ -1,10 +1,10 @@
 CC=                    gcc
 CXX=           g++
-CFLAGS=                -g -Wall -O2 -m64 #-arch ppc
+CFLAGS=                -g -Wall #-O2 #-m64 #-arch ppc
 CXXFLAGS=      $(CFLAGS)
 DFLAGS=                -D_FILE_OFFSET_BITS=64
 OBJS=          
-PROG=          md5sum-lite md5fa maq2sam-short maq2sam-long wgsim
+PROG=          md5sum-lite md5fa maq2sam-short maq2sam-long wgsim afs2
 INCLUDES=      -I..
 SUBDIRS=       .
 
@@ -27,6 +27,9 @@ lib-recur all-recur clean-recur cleanlocal-recur install-recur:
 
 lib:
 
+afs2:afs2.o
+               $(CC) $(CFLAGS) -o $@ afs2.o -lm -lz -L.. -lbam
+
 wgsim:wgsim.o
                $(CC) $(CFLAGS) -o $@ wgsim.o -lm
 
@@ -48,6 +51,9 @@ maq2sam-long:maq2sam.c
 md5fa.o:md5.h md5fa.c
                $(CC) $(CFLAGS) -c -I.. -o $@ md5fa.c
 
+afs2.o:afs2.c ../bam.h
+               $(CC) $(CFLAGS) -c -I.. -o $@ afs2.c
+
 cleanlocal:
                rm -fr gmon.out *.o a.out *.exe *.dSYM $(PROG) *~ *.a