Convert phredQ to probabilities

[samtools.git] / kaln.h

diff --git a/kaln.h b/kaln.h
index 3bcaac150c7e08c7869099c28158cffc130c40c1..b24597cfc2ee159529c5746916597591ecababe2 100644 (file)
--- a/kaln.h
+++ b/kaln.h
@@ -52,7 +52,7 @@ extern "C" {
 
        uint32_t *ka_global_core(uint8_t *seq1, int len1, uint8_t *seq2, int len2, const ka_param_t *ap,
                                                         int *_score, int *n_cigar);
-       int ka_prob_glocal(const uint8_t *_ref, int l_ref, const uint8_t *_query, int l_query, const float *_qual,
+       int ka_prob_glocal(const uint8_t *_ref, int l_ref, const uint8_t *_query, int l_query, const uint8_t *iqual,
                                           const ka_probpar_t *c, int *state, uint8_t *q);
 
 #ifdef __cplusplus