* samtools-0.1.2-10

[samtools.git] / glf.h

diff --git a/glf.h b/glf.h
index af72a48f95385635a09ee692138969acb1c8cfde..99acd3aa56982089a2d61c4d503a4481bfad090b 100644 (file)
--- a/glf.h
+++ b/glf.h
@@ -21,8 +21,8 @@ typedef struct {
        unsigned char max_mapQ; /** maximum mapping quality */
        unsigned char lk[10];   /** log likelihood ratio, capped at 255 */
        unsigned min_lk:8, depth:24; /** minimum lk capped at 255, and the number of mapped reads */
-       unsigned pos; /** this is ***ZERO-BASED*** coordinate */
-} glf2_t;
+       unsigned offset; /** the first base in a chromosome has offset zero. */
+} glf3_t;
 
 typedef struct {
        int32_t l_text;