fixed various issues about the GNU building scripts

[samtools.git] / configure.ac

diff --git a/configure.ac b/configure.ac
index 7bd869662743dc66c146a4c4b80cc6859a55e3f0..d8d25e1d7e261592a75c9ced045703038db78efd 100644 (file)
--- a/configure.ac
+++ b/configure.ac
@@ -6,7 +6,6 @@ AC_CANONICAL_HOST
 AC_PROG_INSTALL
 
 AC_PROG_CC
-AC_PROG_CXX
 
 # set CFLAGS and CXXFLAGS
 user_CFLAGS="${CFLAGS} -D_IOLIB=2 -D_FILE_OFFSET_BITS=64"
@@ -33,76 +32,4 @@ AC_HEADER_STDBOOL
 AC_TYPE_OFF_T
 AC_TYPE_SIZE_T
 
-AC_OUTPUT([Makefile misc/Makefile])
-AC_INIT(SAMTOOLS, 0.1.3)
-AM_CONFIG_HEADER(config.h)
-AM_INIT_AUTOMAKE([no-dependencies])
-AC_CANONICAL_HOST
-
-AC_PROG_INSTALL
-
-AC_PROG_CC
-AC_PROG_CXX
-
-# set CFLAGS and CXXFLAGS
-user_CFLAGS="${CFLAGS} -D_IOLIB=2 -D_FILE_OFFSET_BITS=64"
-generic_CFLAGS="-Wall -L."
-
-AC_ARG_ENABLE(norazf, [  --disable-razf          disable razf support],
-                         [user_DFLAGS="${user_DFLAGS} -D_NO_RAZF"], [])
-AC_ARG_ENABLE(nocurses, [  --disable-curses      disable curses support],
-                         [user_DFLAGS="${user_DFLAGS} -D_NO_CURSES"], [])
-CFLAGS="${generic_CFLAGS} ${user_CFLAGS}"
-CXXFLAGS=$CFLAGS
-
-AC_STDC_HEADERS
-AC_CHECK_FUNCS([bzero memset pow sqrt strcasecmp strdup strstr strtol])
-AC_CHECK_HEADERS([zlib.h fcntl.h malloc.h stddef.h])
-AC_CHECK_TYPES([ptrdiff_t])
-AC_C_CONST
-AC_C_INLINE
-AC_FUNC_FSEEKO
-AC_FUNC_MALLOC
-AC_FUNC_MEMCMP
-AC_FUNC_REALLOC
-AC_HEADER_STDBOOL
-AC_TYPE_OFF_T
-AC_TYPE_SIZE_T
-
-AC_OUTPUT([Makefile misc/Makefile])
-AC_INIT(SAMTOOLS, 0.1.3)
-AM_CONFIG_HEADER(config.h)
-AM_INIT_AUTOMAKE([no-dependencies])
-AC_CANONICAL_HOST
-
-AC_PROG_INSTALL
-
-AC_PROG_CC
-AC_PROG_CXX
-
-# set CFLAGS and CXXFLAGS
-user_CFLAGS="${CFLAGS} -D_IOLIB=2 -D_FILE_OFFSET_BITS=64"
-generic_CFLAGS="-Wall -L."
-
-AC_ARG_ENABLE(norazf, [  --disable-razf          disable razf support],
-                         [user_DFLAGS="${user_DFLAGS} -D_NO_RAZF"], [])
-AC_ARG_ENABLE(nocurses, [  --disable-curses      disable curses support],
-                         [user_DFLAGS="${user_DFLAGS} -D_NO_CURSES"], [])
-CFLAGS="${generic_CFLAGS} ${user_CFLAGS}"
-CXXFLAGS=$CFLAGS
-
-AC_STDC_HEADERS
-AC_CHECK_FUNCS([bzero memset pow sqrt strcasecmp strdup strstr strtol])
-AC_CHECK_HEADERS([zlib.h fcntl.h malloc.h stddef.h])
-AC_CHECK_TYPES([ptrdiff_t])
-AC_C_CONST
-AC_C_INLINE
-AC_FUNC_FSEEKO
-AC_FUNC_MALLOC
-AC_FUNC_MEMCMP
-AC_FUNC_REALLOC
-AC_HEADER_STDBOOL
-AC_TYPE_OFF_T
-AC_TYPE_SIZE_T
-
-AC_OUTPUT([Makefile misc/Makefile])
+AC_OUTPUT([Makefile misc/Makefile])
\ No newline at end of file