changes from git

[samtools.git] / bcftools / vcf.c

diff --git a/bcftools/vcf.c b/bcftools/vcf.c
index 9daa845cba6c13b7d2190fbf77f4877b7979178c..bc110847dab9e2b97d0248ddfef92312de561ce1 100644 (file)
--- a/bcftools/vcf.c
+++ b/bcftools/vcf.c
@@ -186,7 +186,7 @@ int vcf_read(bcf_t *bp, bcf_hdr_t *h, bcf1_t *b)
                                                ((uint8_t*)b->gi[i].data)[k-9] = 0;
                                        } else if (b->gi[i].fmt == bcf_str2int("SP", 2)) {
                                                ((int32_t*)b->gi[i].data)[k-9] = 0;
-                                       } else if (b->gi[i].fmt == bcf_str2int("DP", 2)) {
+                                       } else if (b->gi[i].fmt == bcf_str2int("DP", 2) || b->gi[i].fmt == bcf_str2int("DV", 2)) {
                                                ((uint16_t*)b->gi[i].data)[k-9] = 0;
                                        } else if (b->gi[i].fmt == bcf_str2int("PL", 2)) {
                                                int y = b->n_alleles * (b->n_alleles + 1) / 2;
@@ -210,7 +210,7 @@ int vcf_read(bcf_t *bp, bcf_hdr_t *h, bcf1_t *b)
                                        int x = strtol(q, &q, 10);
                                        if (x > 0xffff) x = 0xffff;
                                        ((uint32_t*)b->gi[i].data)[k-9] = x;
-                               } else if (b->gi[i].fmt == bcf_str2int("DP", 2)) {
+                               } else if (b->gi[i].fmt == bcf_str2int("DP", 2) || b->gi[i].fmt == bcf_str2int("DV", 2)) {
                                        int x = strtol(q, &q, 10);
                                        if (x > 0xffff) x = 0xffff;
                                        ((uint16_t*)b->gi[i].data)[k-9] = x;