* put n_smpl to "bcf1_t" to simplify API a little

[samtools.git] / bcftools / vcf.c

diff --git a/bcftools/vcf.c b/bcftools/vcf.c
index d441d7f0b278bf0d6d72eb05d0e641a0926b04ef..51ccb74521ead6cb7b59baa287b0f102a20683f1 100644 (file)
--- a/bcftools/vcf.c
+++ b/bcftools/vcf.c
@@ -139,6 +139,7 @@ int vcf_read(bcf_t *bp, bcf_hdr_t *h, bcf1_t *b)
        str.l = 0; str.m = b->m_str; str.s = b->str;
        rn.l = rn.m = h->l_nm; rn.s = h->name;
        if (ks_getuntil(v->ks, '\n', &v->line, &dret) < 0) return -1;
+       b->n_smpl = h->n_smpl;
        for (p = kstrtok(v->line.s, "\t", &aux), k = 0; p; p = kstrtok(0, 0, &aux), ++k) {
                *(char*)aux.p = 0;
                if (k == 0) { // ref
@@ -156,7 +157,7 @@ int vcf_read(bcf_t *bp, bcf_hdr_t *h, bcf1_t *b)
                } else if (k <= 8) { // variable length strings
                        kputs(p, &str); kputc('\0', &str);
                        b->l_str = str.l; b->m_str = str.m; b->str = str.s;
-                       if (k == 8) bcf_sync(h->n_smpl, b);
+                       if (k == 8) bcf_sync(b);
                } else { // k > 9
                        if (strncmp(p, "./.", 3) == 0) {
                                for (i = 0; i < b->n_gi; ++i) {