Fix in output of missing haploid genotypes

[samtools.git] / bcftools / prob1.c

diff --git a/bcftools/prob1.c b/bcftools/prob1.c
index 12894371c2eee9a6c5e05a5def471da413735f9b..e3d6b5eb42fee41bb3b2e8f392b5ae38d1934bc5 100644 (file)
--- a/bcftools/prob1.c
+++ b/bcftools/prob1.c
@@ -401,7 +401,7 @@ int call_multiallelic_gt(bcf1_t *b, bcf_p1aux_t *ma, double threshold)
         lk = -log(1-lk/lk_sum)/0.2302585;
         if ( idp>=0 && ((uint16_t*)b->gi[idp].data)[isample]==0 ) 
         {
-            ((uint8_t*)b->gi[old_n_gi].data)[isample]   = als | 1<<7;
+            ((uint8_t*)b->gi[old_n_gi].data)[isample]   = 1<<7;
             ((uint8_t*)b->gi[old_n_gi+1].data)[isample] = 0;
             continue;
         }
@@ -447,9 +447,9 @@ int call_multiallelic_gt(bcf1_t *b, bcf_p1aux_t *ma, double threshold)
             if ( a.is_tested) ksprintf(&s, ";PV4=%.2g,%.2g,%.2g,%.2g", a.p[0], a.p[1], a.p[2], a.p[3]);
             ksprintf(&s, ";DP4=%d,%d,%d,%d;MQ=%d", a.d[0], a.d[1], a.d[2], a.d[3], a.mq);
         }
+        kputc('\0', &s);
         rm_info(&s, "I16=");
         rm_info(&s, "QS=");
-        kputc('\0', &s);
     }
     kputs(b->fmt, &s); kputc('\0', &s);
     free(b->str);