* allow to set min base q

[samtools.git] / bcftools / bcf.c

diff --git a/bcftools/bcf.c b/bcftools/bcf.c
index f8b55c2cf02161828e4faa35665ca12d986978cc..e40631975af4351436efdc938c01dca054567c85 100644 (file)
--- a/bcftools/bcf.c
+++ b/bcftools/bcf.c
@@ -17,9 +17,9 @@ bcf_t *bcf_open(const char *fn, const char *mode)
        bcf_t *b;
        b = calloc(1, sizeof(bcf_t));
        if (strchr(mode, 'w')) {
-               b->fp = strcmp(fn, "-")? bgzf_open(fn, mode) : bgzf_fdopen(fileno(stdout), "w");
+               b->fp = strcmp(fn, "-")? bgzf_open(fn, mode) : bgzf_fdopen(fileno(stdout), mode);
        } else {
-               b->fp = strcmp(fn, "-")? bgzf_open(fn, mode) : bgzf_fdopen(fileno(stdin), "r");
+               b->fp = strcmp(fn, "-")? bgzf_open(fn, mode) : bgzf_fdopen(fileno(stdin), mode);
        }
        b->fp->owned_file = 1;
        if (strchr(mode, 'r')) bcf_hdr_read(b);