changes from git

[samtools.git] / bcftools / bcf.c

diff --git a/bcftools/bcf.c b/bcftools/bcf.c
index 84a8e767ec58adb397630f609a52670779f99c89..de7bc116736c168fc206a1905af6daccc67005c2 100644 (file)
--- a/bcftools/bcf.c
+++ b/bcftools/bcf.c
@@ -140,7 +140,7 @@ int bcf_sync(bcf1_t *b)
        for (i = 0; i < b->n_gi; ++i) {
                if (b->gi[i].fmt == bcf_str2int("PL", 2)) {
                        b->gi[i].len = b->n_alleles * (b->n_alleles + 1) / 2;
-               } else if (b->gi[i].fmt == bcf_str2int("DP", 2) || b->gi[i].fmt == bcf_str2int("HQ", 2)) {
+               } else if (b->gi[i].fmt == bcf_str2int("DP", 2) || b->gi[i].fmt == bcf_str2int("HQ", 2) || b->gi[i].fmt == bcf_str2int("DV", 2)) {
                        b->gi[i].len = 2;
                } else if (b->gi[i].fmt == bcf_str2int("GQ", 2) || b->gi[i].fmt == bcf_str2int("GT", 2)) {
                        b->gi[i].len = 1;
@@ -244,7 +244,7 @@ void bcf_fmt_core(const bcf_hdr_t *h, bcf1_t *b, kstring_t *s)
                                        if (k > 0) kputc(',', s);
                                        kputw(d[k], s);
                                }
-                       } else if (b->gi[i].fmt == bcf_str2int("DP", 2)) {
+                       } else if (b->gi[i].fmt == bcf_str2int("DP", 2) || b->gi[i].fmt == bcf_str2int("DV", 2)) {
                                kputw(((uint16_t*)b->gi[i].data)[j], s);
                        } else if (b->gi[i].fmt == bcf_str2int("GQ", 2)) {
                                kputw(((uint8_t*)b->gi[i].data)[j], s);