Release samtools-0.1.6

[samtools.git] / bamtk.c

diff --git a/bamtk.c b/bamtk.c
index 3742bb2454e0be3fc9005d9c4f6117103616ed92..ea6667205c9b642e9e5540470d33b5ab274d727a 100644 (file)
--- a/bamtk.c
+++ b/bamtk.c
@@ -9,7 +9,7 @@
 #endif
 
 #ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.1.5-34 (r451)"
+#define PACKAGE_VERSION "0.1.6 (r453)"
 #endif
 
 int bam_taf2baf(int argc, char *argv[]);
@@ -78,7 +78,6 @@ static int usage()
        fprintf(stderr, "Usage:   samtools <command> [options]\n\n");
        fprintf(stderr, "Command: view        SAM<->BAM conversion\n");
        fprintf(stderr, "         sort        sort alignment file\n");
-       fprintf(stderr, "         merge       merge sorted alignments (Picard recommended)\n");
        fprintf(stderr, "         pileup      generate pileup output\n");
        fprintf(stderr, "         faidx       index/extract FASTA\n");
 #if _CURSES_LIB != 0
@@ -86,10 +85,11 @@ static int usage()
 #endif
        fprintf(stderr, "         index       index alignment\n");
        fprintf(stderr, "         fixmate     fix mate information\n");
-       fprintf(stderr, "         rmdup       remove PCR duplicates (Picard recommended)\n");
        fprintf(stderr, "         glfview     print GLFv3 file\n");
        fprintf(stderr, "         flagstat    simple stats\n");
        fprintf(stderr, "         calmd       recalculate MD/NM tags and '=' bases\n");
+       fprintf(stderr, "         merge       merge sorted alignments (Picard recommended)\n");
+       fprintf(stderr, "         rmdup       remove PCR duplicates (Picard recommended)\n");
        fprintf(stderr, "\n");
        return 1;
 }