* samtools-0.1.7-14 (r591)

[samtools.git] / bamtk.c

diff --git a/bamtk.c b/bamtk.c
index c1c4a49531e14f3c5f516f8aa9f4ce25faa75d21..0594b119ba13ea8960fec6601c88ebf7fcf5128e 100644 (file)
--- a/bamtk.c
+++ b/bamtk.c
@@ -9,11 +9,12 @@
 #endif
 
 #ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.1.7-13 (r590)"
+#define PACKAGE_VERSION "0.1.7-14 (r591)"
 #endif
 
 int bam_taf2baf(int argc, char *argv[]);
 int bam_pileup(int argc, char *argv[]);
+int bam_mpileup(int argc, char *argv[]);
 int bam_merge(int argc, char *argv[]);
 int bam_index(int argc, char *argv[]);
 int bam_sort(int argc, char *argv[]);
@@ -79,6 +80,7 @@ static int usage()
        fprintf(stderr, "Command: view        SAM<->BAM conversion\n");
        fprintf(stderr, "         sort        sort alignment file\n");
        fprintf(stderr, "         pileup      generate pileup output\n");
+       fprintf(stderr, "         mpileup     multi-way pileup\n");
        fprintf(stderr, "         faidx       index/extract FASTA\n");
 #if _CURSES_LIB != 0
        fprintf(stderr, "         tview       text alignment viewer\n");
@@ -108,6 +110,7 @@ int main(int argc, char *argv[])
        if (strcmp(argv[1], "view") == 0) return main_samview(argc-1, argv+1);
        else if (strcmp(argv[1], "import") == 0) return main_import(argc-1, argv+1);
        else if (strcmp(argv[1], "pileup") == 0) return bam_pileup(argc-1, argv+1);
+       else if (strcmp(argv[1], "mpileup") == 0) return bam_mpileup(argc-1, argv+1);
        else if (strcmp(argv[1], "merge") == 0) return bam_merge(argc-1, argv+1);
        else if (strcmp(argv[1], "sort") == 0) return bam_sort(argc-1, argv+1);
        else if (strcmp(argv[1], "index") == 0) return bam_index(argc-1, argv+1);