* samtools-0.1.2-7

[samtools.git] / bam_stat.c

diff --git a/bam_stat.c b/bam_stat.c
index 142933666d687e261367664aaabcdbfcb4e3107f..a4522daa49257b920ab26586a6062d046a26d9e3 100644 (file)
--- a/bam_stat.c
+++ b/bam_stat.c
@@ -62,9 +62,9 @@ int bam_flagstat(int argc, char *argv[])
        printf("%lld paired in sequencing\n", s->n_pair_all);
        printf("%lld read1\n", s->n_read1);
        printf("%lld read2\n", s->n_read2);
-       printf("%lld properly paired (%.2f%%)\n", s->n_pair_good, (float)s->n_pair_good / s->n_reads * 100.0);
+       printf("%lld properly paired (%.2f%%)\n", s->n_pair_good, (float)s->n_pair_good / s->n_pair_all * 100.0);
        printf("%lld with itself and mate mapped\n", s->n_pair_map);
-       printf("%lld singletons (%.2f%%)\n", s->n_sgltn, (float)s->n_sgltn / s->n_reads * 100.0);
+       printf("%lld singletons (%.2f%%)\n", s->n_sgltn, (float)s->n_sgltn / s->n_pair_all * 100.0);
        printf("%lld with mate mapped to a different chr\n", s->n_diffchr);
        printf("%lld with mate mapped to a different chr (mapQ>=5)\n", s->n_diffhigh);
        free(s);