Release samtools-0.1.8

[samtools.git] / bam_plcmd.c

diff --git a/bam_plcmd.c b/bam_plcmd.c
index 99592276c0bded2906122a09528f5453bdb7ebd3..6804795bd107405982cada8544051cc073fdf55e 100644 (file)
--- a/bam_plcmd.c
+++ b/bam_plcmd.c
@@ -390,7 +390,7 @@ int bam_pileup(int argc, char *argv[])
                fprintf(stderr, "        -t FILE   list of reference sequences (force -S)\n");
                fprintf(stderr, "        -l FILE   list of sites at which pileup is output\n");
                fprintf(stderr, "        -f FILE   reference sequence in the FASTA format\n\n");
-               fprintf(stderr, "        -c        output the maq consensus sequence\n");
+               fprintf(stderr, "        -c        output the SOAPsnp consensus sequence\n");
                fprintf(stderr, "        -v        print variants only (for -c)\n");
                fprintf(stderr, "        -g        output in the GLFv3 format (suppressing -c/-i/-s)\n");
                fprintf(stderr, "        -T FLOAT  theta in maq consensus calling model (for -c/-g) [%f]\n", d->c->theta);