* make tview more friendly

[samtools.git] / bam_plcmd.c

diff --git a/bam_plcmd.c b/bam_plcmd.c
index 84838dd98e1d56c7270ae78225a8023e9c96ca57..665304f9019621a8734c0651db57a27a26c49fb2 100644 (file)
--- a/bam_plcmd.c
+++ b/bam_plcmd.c
@@ -352,7 +352,7 @@ int bam_pileup(int argc, char *argv[])
                case 'f': fn_fa = strdup(optarg); break;
                case 'T': d->c->theta = atof(optarg); break;
                case 'N': d->c->n_hap = atoi(optarg); break;
-               case 'r': d->c->het_rate = atof(optarg); break;
+               case 'r': d->c->het_rate = atof(optarg); d->ido->r_snp = d->c->het_rate; break;
                case 'M': d->c->cap_mapQ = atoi(optarg); break;
                case 'd': d->max_depth = atoi(optarg); break;
                case 'c': d->format |= BAM_PLF_CNS; break;