* samtools-0.1.5-18 (r423)

[samtools.git] / bam_plcmd.c

diff --git a/bam_plcmd.c b/bam_plcmd.c
index 391767ab134833f5dcc5ea914866fd7f10b97718..5bf1ed095096b7cd91fc99d2256467b89e394d33 100644 (file)
--- a/bam_plcmd.c
+++ b/bam_plcmd.c
@@ -284,7 +284,8 @@ static int pileup_func(uint32_t tid, uint32_t pos, int n, const bam_pileup1_t *p
                printf("%d\t%d\t", rms_mapq, n);
                printf("%s\t%s\t", r->s[0], r->s[1]);
                //printf("%d\t%d\t", r->gl[0], r->gl[1]);
-               printf("%d\t%d\t%d\n", r->cnt1, r->cnt2, r->cnt_anti);
+               printf("%d\t%d\t%d\t", r->cnt1, r->cnt2, r->cnt_anti);
+               printf("%d\t%d\n", r->cnt_ref, r->cnt_ambi);
                bam_maqindel_ret_destroy(r);
        }
        return 0;